JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UMODL1_chr21_42066317_42147996	0/0	c0173	3957	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0174	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0175	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0176	3957	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0177	3957	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0178	3957	1	1	0	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0179	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0180	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0181	3957	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0182	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0183	3957	1	0	0	0	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0184	3957	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0185	3957	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0186	3957	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0187	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0188	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0189	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0190	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0191	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0192	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0193	3957	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0194	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0195	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0196	3957	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0197	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0198	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0199	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0200	3957	1	0	0	0	0	1	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0201	3957	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0202	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0203	3957	1	0	0	0	1	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0204	3957	1	0	1	0	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMODL1_chr21_42066317_42147996	0/0	c0205	3957	1	0	0	1	0	0	copy fasta	UMODL1	chr21	42066317	42147996
UMOD_chr16_20328051_20357715	0/0	c0001	1923	188	60	32	66	11	19	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	1/0	c0002	1923	136	10	27	85	1	12	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0003	1923	30	5	5	15	0	5	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/1	c0004	1923	23	6	8	0	4	4	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0005	1923	9	9	0	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0006	1923	5	0	3	0	0	2	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0007	1923	3	3	0	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0008	1923	2	0	0	0	0	2	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0009	1923	2	1	1	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0010	1923	1	0	0	0	0	1	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0011	1923	1	1	0	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0012	1923	1	1	0	0	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0013	1923	1	0	0	1	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0014	1923	1	0	0	1	0	0	copy fasta	UMOD	chr16	20328051	20357715
UMOD_chr16_20328051_20357715	0/0	c0015	1923	1	0	0	0	0	1	copy fasta	UMOD	chr16	20328051	20357715
UMPS_chr3_124725452_124754273	1/1	c0001	1443	310	64	57	141	15	31	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0002	1443	79	14	16	41	3	5	copy fasta	UMPS	chr3	124725452	124754273