JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UMPS_chr3_124725452_124754273	0/0	c0003	1443	15	0	1	13	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0004	1443	7	0	0	4	0	3	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0005	1443	4	4	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0006	1443	3	3	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0007	1443	3	0	0	3	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0008	1443	3	0	0	0	0	3	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0009	1443	3	3	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0010	1443	3	3	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0011	1443	1	1	0	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0012	1443	1	0	1	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0013	1443	1	0	0	0	0	1	copy fasta	UMPS	chr3	124725452	124754273
UMPS_chr3_124725452_124754273	0/0	c0014	1443	1	0	1	0	0	0	copy fasta	UMPS	chr3	124725452	124754273
UNC119B_chr12_120705458_120728640	1/1	c0001	756	329	64	64	145	16	38	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	c0002	756	66	34	4	25	1	2	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	c0003	756	2	0	0	2	0	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119B_chr12_120705458_120728640	0/0	c0004	756	1	0	0	0	1	0	copy fasta	UNC119B	chr12	120705458	120728640
UNC119_chr17_28541708_28557624	1/1	c0001	723	378	92	74	154	14	42	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	c0002	723	2	0	0	2	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	c0003	723	2	2	0	0	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	c0004	723	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	c0005	723	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	c0006	723	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC119_chr17_28541708_28557624	0/0	c0007	723	1	0	0	1	0	0	copy fasta	UNC119	chr17	28541708	28557624
UNC13A_chr19_17596336_17693354	0/1	c0001	5112	54	0	11	35	1	6	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0002	5112	53	27	8	11	2	5	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0003	5112	46	2	7	25	2	10	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0004	5112	23	6	4	9	0	4	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0005	5112	13	5	3	0	0	5	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0006	5112	11	0	4	2	3	2	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0007	5112	10	9	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0008	5112	9	7	2	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0009	5112	5	0	3	0	1	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0010	5112	5	0	5	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0011	5112	5	3	2	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0012	5112	4	0	2	0	2	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0013	5112	3	0	1	0	0	2	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0014	5112	3	0	0	3	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0015	5112	3	1	1	0	0	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0016	5112	3	2	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0017	5112	2	0	1	0	1	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0018	5112	2	0	0	0	2	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0019	5112	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0020	5112	2	0	2	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0021	5112	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0022	5112	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0023	5112	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0024	5112	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0025	5112	2	0	0	0	0	2	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0026	5112	2	0	0	2	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0027	5112	2	2	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354