JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC13A_chr19_17596336_17693354	0/0	c0028	5112	2	0	0	2	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0029	5112	2	0	0	0	1	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0030	5112	2	0	2	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0031	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0032	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0033	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0034	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0035	5112	1	0	0	0	0	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0036	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0037	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0038	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0039	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0040	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0041	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0042	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0043	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0044	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0045	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0046	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0047	5112	1	0	0	0	0	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0048	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0049	5112	1	0	0	0	1	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0050	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0051	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0052	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0053	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0054	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0055	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0056	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0057	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0058	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0059	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0060	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0061	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0062	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0063	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0064	5112	1	0	1	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	1/0	c0065	5112	1	0	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0066	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0067	5112	1	0	0	0	0	1	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0068	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0069	5112	1	0	0	1	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0070	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0071	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13A_chr19_17596336_17693354	0/0	c0072	5112	1	1	0	0	0	0	copy fasta	UNC13A	chr19	17596336	17693354
UNC13B_chr9_35157009_35410335	0/0	c0001	13023	49	13	6	25	2	3	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0002	13023	34	0	2	24	2	6	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0003	13023	22	7	2	12	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0004	13023	12	1	4	0	1	6	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0005	13023	12	6	4	1	1	0	copy fasta	UNC13B	chr9	35157009	35410335