JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC13B_chr9_35157009_35410335	0/0	c0006	13023	12	11	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	1/0	c0007	13023	11	9	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0008	13023	8	5	1	2	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0009	13023	5	5	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0010	13023	5	0	0	5	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0011	13023	4	4	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0012	13023	4	1	2	0	1	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0013	13023	3	0	0	3	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0014	13023	2	0	0	0	0	2	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/1	c0015	13023	2	0	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0016	13023	2	0	0	2	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0017	13023	2	0	0	0	1	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0018	13023	2	0	0	2	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0019	13023	2	0	2	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0020	13023	2	0	0	0	0	2	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0021	13023	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0022	13023	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0023	13023	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0024	13023	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0025	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0026	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0027	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0028	13023	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0029	13023	1	0	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0030	13023	1	0	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0031	13023	1	0	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0032	13023	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0033	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0034	13023	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0035	13023	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0036	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0037	13023	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0038	13023	1	0	1	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0039	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0040	13023	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0041	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0042	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0043	13023	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0044	13023	1	0	0	1	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0045	13023	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0046	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0047	13023	1	1	0	0	0	0	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0048	13023	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13B_chr9_35157009_35410335	0/0	c0049	13023	1	0	0	0	0	1	copy fasta	UNC13B	chr9	35157009	35410335
UNC13C_chr15_53973441_54633605	0/1	c0001	6645	44	21	11	4	2	5	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	c0002	6645	33	17	5	7	2	2	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	c0003	6645	19	3	5	7	1	3	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	c0004	6645	4	4	0	0	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	c0005	6645	3	0	0	3	0	0	copy fasta	UNC13C	chr15	53973441	54633605
UNC13C_chr15_53973441_54633605	0/0	c0006	6645	3	0	0	3	0	0	copy fasta	UNC13C	chr15	53973441	54633605