JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BMERB1_chr16_15429588_15593259	0/0	c0004	615	3	2	1	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	c0005	615	2	2	0	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	c0006	615	1	1	0	0	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMERB1_chr16_15429588_15593259	0/0	c0007	615	1	0	0	1	0	0	copy fasta	BMERB1	chr16	15429588	15593259
BMF_chr15_40082890_40113879	1/1	c0001	555	409	88	70	189	18	42	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	c0002	555	2	0	0	2	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	c0003	555	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	c0004	555	1	1	0	0	0	0	copy fasta	BMF	chr15	40082890	40113879
BMF_chr15_40082890_40113879	0/0	c0005	555	1	0	0	1	0	0	copy fasta	BMF	chr15	40082890	40113879
BMI1_chr10_22316099_22336484	1/1	c0001	981	245	89	58	64	6	26	copy fasta	BMI1	chr10	22316099	22336484
BMI1_chr10_22316099_22336484	0/0	c0002	981	1	1	0	0	0	0	copy fasta	BMI1	chr10	22316099	22336484
BMP10_chr2_68855909_68876397	1/0	c0001	1275	338	62	55	165	16	39	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	c0002	1275	62	27	13	17	0	5	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	c0003	1275	7	3	4	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	c0004	1275	3	3	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	c0005	1275	1	0	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	c0006	1275	1	0	1	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	c0007	1275	1	0	0	1	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	c0008	1275	1	0	0	1	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/1	c0009	1275	1	0	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP10_chr2_68855909_68876397	0/0	c0010	1275	1	1	0	0	0	0	copy fasta	BMP10	chr2	68855909	68876397
BMP15_chrX_50905735_50921641	1/1	c0001	1179	218	31	49	100	13	23	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0002	1182	47	31	5	8	0	3	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0003	1182	8	8	0	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0004	1179	5	0	2	0	0	3	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0005	1179	4	4	0	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0006	1182	3	3	0	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0007	1182	2	1	1	0	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0008	1179	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0009	1179	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0010	1178	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0011	1178	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0012	1179	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0013	1179	1	0	0	1	0	0	copy fasta	BMP15	chrX	50905735	50921641
BMP15_chrX_50905735_50921641	0/0	c0014	1179	1	0	0	0	0	1	copy fasta	BMP15	chrX	50905735	50921641
BMP1_chr8_22160372_22206482	1/1	c0001	2193	332	78	60	145	12	35	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0002	2193	69	12	6	41	4	6	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0003	2193	2	0	0	0	0	2	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0004	2193	2	2	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0005	2193	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0006	2193	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0007	2193	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0008	2193	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0009	2193	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0010	2193	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0011	2193	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0012	2193	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0013	2193	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0014	2193	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0015	2193	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22206482