JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC13D_chr17_75822225_75849404	0/0	c0016	3273	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0017	3273	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0018	3273	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0019	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0020	3273	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0021	3273	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0022	3273	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0023	3273	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0024	3273	1	0	0	0	1	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0025	3273	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0026	3273	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0027	3273	1	0	0	0	0	1	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0028	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0029	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0030	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0031	3273	1	0	0	0	0	1	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0032	3273	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0033	3273	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0034	3273	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0035	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0036	3273	1	0	0	0	0	1	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0037	3273	1	0	1	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0038	3273	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0039	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0040	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0041	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0042	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0043	3273	1	0	0	1	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC13D_chr17_75822225_75849404	0/0	c0044	3273	1	1	0	0	0	0	copy fasta	UNC13D	chr17	75822225	75849404
UNC45A_chr15_90930285_90959093	1/1	c0001	2835	298	54	56	136	14	36	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0002	2835	21	10	4	7	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0003	2835	17	15	2	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0004	2835	13	0	3	0	2	8	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0005	2835	9	8	1	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0006	2835	6	0	0	6	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0007	2835	6	0	0	6	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0008	2835	5	0	5	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0009	2835	3	3	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0010	2835	2	2	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0011	2835	2	0	0	2	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0012	2835	1	0	1	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0013	2835	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0014	2835	1	0	0	1	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0015	2835	1	0	1	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0016	2835	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0017	2835	1	1	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0018	2835	1	0	0	1	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0019	2835	1	1	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0020	2835	1	0	0	1	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0021	2835	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093