JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC45A_chr15_90930285_90959093	0/0	c0022	2835	1	0	0	0	0	1	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0023	2835	1	1	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0024	2835	1	1	0	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45A_chr15_90930285_90959093	0/0	c0025	2835	1	0	1	0	0	0	copy fasta	UNC45A	chr15	90930285	90959093
UNC45B_chr17_35142817_35194343	1/1	c0001	2790	264	46	51	133	8	24	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0002	2790	55	0	0	50	0	5	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0003	2790	23	2	11	7	1	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0004	2790	23	21	1	0	0	1	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0005	2790	8	0	0	4	0	4	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0006	2790	7	0	3	0	2	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0007	2790	7	7	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0008	2790	6	1	3	0	1	1	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0009	2790	5	4	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0010	2790	3	3	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0011	2790	3	3	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0012	2790	3	3	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0013	2790	2	0	0	0	0	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0014	2790	2	0	0	2	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0015	2790	2	0	0	2	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0016	2790	2	0	0	0	0	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0017	2790	2	0	0	0	0	2	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0018	2790	2	0	0	1	0	1	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0019	2790	2	2	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0020	2790	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0021	2790	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0022	2790	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0023	2790	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0024	2790	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0025	2790	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0026	2790	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0027	2790	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0028	2790	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0029	2790	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0030	2790	1	0	1	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0031	2790	1	0	0	1	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC45B_chr17_35142817_35194343	0/0	c0032	2790	1	1	0	0	0	0	copy fasta	UNC45B	chr17	35142817	35194343
UNC50_chr2_98603589_98623515	1/1	c0001	780	414	84	84	188	12	44	copy fasta	UNC50	chr2	98603589	98623515
UNC5A_chr5_176805559_176885898	1/1	c0001	2529	242	76	51	72	8	33	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	c0002	2529	9	4	2	3	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	c0003	2529	7	5	2	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	c0004	2529	3	3	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	c0005	2529	2	2	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	c0006	2529	2	2	0	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	c0007	2529	1	0	0	0	0	1	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	c0008	2529	1	0	0	1	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5A_chr5_176805559_176885898	0/0	c0009	2529	1	0	1	0	0	0	copy fasta	UNC5A	chr5	176805559	176885898
UNC5B_chr10_71207570_71307864	0/1	c0001	2838	129	29	25	44	8	22	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	1/0	c0002	2838	72	8	14	43	1	5	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0003	2838	47	11	6	25	0	5	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0004	2838	20	0	0	20	0	0	copy fasta	UNC5B	chr10	71207570	71307864