JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC5B_chr10_71207570_71307864	0/0	c0005	2838	14	0	4	7	0	3	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0006	2838	9	8	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0007	2838	7	6	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0008	2838	5	0	0	5	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0009	2838	4	2	2	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0010	2838	4	1	1	0	1	1	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0011	2838	3	3	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0012	2838	3	3	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0013	2838	2	0	0	2	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0014	2805	2	2	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0015	2838	2	2	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0016	2829	2	0	2	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0017	2838	2	2	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0018	2838	2	2	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0019	2835	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0020	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0021	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0022	2805	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0023	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0024	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0025	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0026	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0027	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0028	2938	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0029	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0030	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0031	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0032	2835	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0033	2838	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0034	2835	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0035	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0036	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0037	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0038	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0039	2838	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0040	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0041	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0042	2838	1	0	0	0	1	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0043	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0044	2808	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0045	2888	1	0	0	0	0	1	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0046	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0047	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0048	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0049	2838	1	0	0	0	0	1	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0050	2838	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0051	2838	1	0	0	0	1	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0052	2838	1	0	0	1	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0053	2838	1	0	1	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0054	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864