JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC5B_chr10_71207570_71307864	0/0	c0055	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0056	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5B_chr10_71207570_71307864	0/0	c0057	2838	1	1	0	0	0	0	copy fasta	UNC5B	chr10	71207570	71307864
UNC5CL_chr6_41021895_41044221	1/0	c0001	1557	205	50	38	97	6	13	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0002	1557	113	24	17	53	1	18	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/1	c0003	1557	24	3	5	10	1	4	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0004	1557	10	7	1	0	0	2	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0005	1557	5	0	2	0	2	1	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0006	1557	4	0	0	4	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0007	1557	3	3	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0008	1557	3	3	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0009	1557	2	0	2	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0010	1557	2	2	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0011	1557	2	2	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0012	1557	1	1	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0013	1557	1	1	0	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0014	1557	1	0	1	0	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0015	1557	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0016	1557	1	0	0	0	0	1	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0017	1557	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0018	1557	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0019	1557	1	0	0	0	0	1	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0020	1557	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0021	1557	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5CL_chr6_41021895_41044221	0/0	c0022	1557	1	0	0	1	0	0	copy fasta	UNC5CL	chr6	41021895	41044221
UNC5C_chr4_95157504_95553973	0/0	c0001	2796	28	1	8	14	2	3	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0002	2796	24	0	4	19	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0003	2796	17	9	1	6	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0004	2796	17	9	1	3	0	4	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0005	2796	16	2	1	8	1	4	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0006	2796	10	3	1	5	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0007	2796	8	0	3	2	1	2	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0008	2796	7	2	4	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0009	2796	7	5	2	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0010	2796	7	7	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0011	2796	6	6	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0012	2796	5	3	2	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0013	2796	4	0	0	4	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0014	2796	4	4	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0015	2796	3	3	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0016	2796	3	0	2	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0017	2796	3	0	2	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0018	2796	2	1	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0019	2796	2	2	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0020	2796	2	1	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0021	2796	2	2	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0022	2796	2	0	2	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0023	2796	2	0	0	0	0	2	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0024	2796	2	0	1	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0025	2796	2	0	1	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973