JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC5C_chr4_95157504_95553973	0/0	c0026	2796	1	1	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0027	2796	1	1	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0028	2796	1	1	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0029	2796	1	0	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0030	2796	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0031	2796	1	0	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0032	2796	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0033	2796	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0034	2796	1	0	0	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0035	2796	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0036	2796	1	0	1	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0037	2796	1	1	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0038	2796	1	0	0	0	1	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0039	2796	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0040	2796	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0041	2796	1	0	0	0	0	1	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0042	2796	1	1	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0043	2796	1	0	0	1	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5C_chr4_95157504_95553973	0/0	c0044	2796	1	1	0	0	0	0	copy fasta	UNC5C	chr4	95157504	95553973
UNC5D_chr8_35230475_35801540	0/0	c0001	2862	35	17	2	9	0	7	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	c0002	2862	11	10	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	c0003	2862	9	8	1	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	c0004	2862	3	3	0	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	c0005	2862	2	2	0	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	c0006	2862	1	1	0	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	c0007	2862	1	0	0	0	0	1	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	c0008	2862	1	1	0	0	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC5D_chr8_35230475_35801540	0/0	c0009	2862	1	0	0	1	0	0	copy fasta	UNC5D	chr8	35230475	35801540
UNC79_chr14_93425939_93712876	0/0	c0001	8124	50	18	9	17	2	4	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0002	8124	20	11	4	2	0	3	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0003	8124	19	3	5	5	3	3	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0004	8124	14	6	4	1	2	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0005	8124	7	5	0	1	0	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/1	c0006	8124	6	0	0	0	2	3	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0007	8124	5	0	0	4	0	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0008	8124	5	0	0	5	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0009	8124	5	5	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0010	8124	4	0	4	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0011	8124	4	4	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0012	8124	4	0	4	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0013	8124	3	3	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0014	8124	3	0	2	0	1	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0015	8124	3	1	1	0	1	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0016	8124	3	3	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0017	8124	3	0	0	3	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0018	8124	3	0	0	3	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0019	8124	3	3	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0020	8124	2	0	2	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0021	8124	2	2	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0022	8124	2	2	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876