JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC79_chr14_93425939_93712876	0/0	c0023	8124	2	2	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0024	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0025	8124	1	0	0	0	0	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0026	8124	1	0	1	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0027	8124	1	0	0	0	0	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0028	8124	1	0	0	0	0	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0029	8124	1	0	0	1	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0030	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0031	8124	1	0	0	1	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0032	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0033	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0034	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0035	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0036	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0037	8124	1	0	0	0	0	1	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0038	8124	1	0	0	1	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0039	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0040	8124	1	0	0	0	1	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0041	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0042	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0043	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC79_chr14_93425939_93712876	0/0	c0044	8124	1	1	0	0	0	0	copy fasta	UNC79	chr14	93425939	93712876
UNC80_chr2_209766832_210004296	0/0	c0001	9975	59	14	16	18	4	7	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	1/1	c0002	9975	38	8	12	9	3	4	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0003	9975	7	2	2	3	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0004	9975	7	1	2	4	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0005	9975	6	0	1	0	2	3	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0006	9975	5	1	0	0	0	4	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0007	9975	3	3	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0008	9975	3	0	0	3	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0009	9975	3	3	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0010	9975	3	3	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0011	9975	3	2	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0012	9975	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0013	9975	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0014	9975	2	0	0	2	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0015	9975	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0016	9975	2	0	0	0	0	2	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0017	9975	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0018	9975	2	2	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0019	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0020	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0021	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0022	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0023	9975	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0024	9975	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0025	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0026	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0027	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0028	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296