JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC80_chr2_209766832_210004296	0/0	c0029	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0030	9975	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0031	9975	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0032	9975	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0033	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0034	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0035	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0036	9975	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0037	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0038	9975	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0039	9975	1	0	0	0	0	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0040	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0041	9975	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0042	9975	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0043	9975	1	0	0	0	1	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0044	9975	1	0	0	0	0	1	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0045	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0046	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0047	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0048	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0049	9975	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0050	9975	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0051	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0052	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0053	9975	1	0	0	1	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0054	9975	1	0	1	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC80_chr2_209766832_210004296	0/0	c0055	9975	1	1	0	0	0	0	copy fasta	UNC80	chr2	209766832	210004296
UNC93A_chr6_167286315_167321014	0/0	c0001	1374	129	22	16	71	7	13	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	1/1	c0002	1374	87	4	27	42	5	7	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0003	1374	58	6	11	27	1	13	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0004	1374	28	2	7	12	1	6	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0005	1374	14	0	0	14	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0006	1374	13	0	3	10	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0007	1374	12	10	2	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0008	1374	12	1	1	9	0	1	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0009	1374	11	7	1	0	1	2	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0010	1374	11	6	3	0	1	1	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0011	1374	9	0	0	9	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0012	1374	8	8	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0013	1374	7	6	1	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0014	1374	5	0	5	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0015	1374	4	0	0	0	0	4	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0016	1374	3	2	1	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0017	1374	3	3	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0018	1374	2	2	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0019	1374	2	2	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0020	1374	2	2	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0021	1374	2	0	0	0	2	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0022	1374	2	2	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0023	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014