JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNC93A_chr6_167286315_167321014	0/0	c0024	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0025	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0026	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0027	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0028	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0029	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0030	1374	1	0	0	0	0	1	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0031	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0032	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0033	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0034	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0035	1374	1	0	1	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0036	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0037	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0038	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0039	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0040	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0041	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0042	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0043	1374	1	0	1	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0044	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0045	1374	1	1	0	0	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93A_chr6_167286315_167321014	0/0	c0046	1374	1	0	0	1	0	0	copy fasta	UNC93A	chr6	167286315	167321014
UNC93B1_chr11_67986100_68009097	1/1	c0001	1794	179	36	40	84	6	11	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0002	1794	95	37	16	32	4	6	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0003	1794	64	8	10	32	5	9	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0004	1794	12	3	0	8	0	1	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0005	1794	4	0	0	2	0	2	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0006	1794	3	3	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0007	1794	2	0	0	2	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0008	1794	2	0	0	0	0	2	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0009	1794	2	2	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0010	1794	2	0	1	0	1	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0011	1794	1	0	0	0	0	1	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0012	1794	1	1	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0013	1794	1	1	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0014	1794	1	0	1	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNC93B1_chr11_67986100_68009097	0/0	c0015	1794	1	1	0	0	0	0	copy fasta	UNC93B1	chr11	67986100	68009097
UNCX_chr7_1227872_1242326	1/1	c0001	1596	374	90	69	165	12	36	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0002	1597	11	1	2	8	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0003	1596	6	0	0	6	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0004	1596	3	2	1	0	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0005	1596	3	0	1	0	0	2	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0006	1596	3	0	2	1	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0007	1597	1	0	0	1	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0008	1596	1	1	0	0	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0009	1596	1	1	0	0	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0010	1596	1	0	1	0	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0011	1596	1	0	0	1	0	0	copy fasta	UNCX	chr7	1227872	1242326
UNCX_chr7_1227872_1242326	0/0	c0012	1596	1	1	0	0	0	0	copy fasta	UNCX	chr7	1227872	1242326