JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNG_chr12_109092597_109115992	1/1	c0001	942	440	84	68	226	14	46	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	c0002	942	6	5	1	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	c0003	942	3	3	0	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	c0004	942	1	1	0	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	c0005	942	1	0	1	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNG_chr12_109092597_109115992	0/0	c0006	942	1	1	0	0	0	0	copy fasta	UNG	chr12	109092597	109115992
UNKL_chr16_1358205_1419704	0/1	c0001	2202	167	27	41	70	7	21	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0002	2170	50	14	9	16	5	6	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0003	2202	27	25	2	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0004	2202	17	0	0	17	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0005	2202	10	2	2	0	1	5	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	1/0	c0006	2202	10	2	4	0	1	2	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0007	2170	6	5	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0008	2202	5	5	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0009	2202	3	3	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0010	2170	2	0	0	2	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0011	2202	2	0	1	0	1	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0012	2202	2	0	0	2	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0013	2202	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0014	2202	2	2	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0015	2170	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0016	2202	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0017	2202	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0018	2202	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0019	2170	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0020	2170	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0021	2202	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0022	2202	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0023	2202	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0024	2214	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0025	2202	1	0	0	0	1	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0026	2214	1	0	0	0	0	1	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0027	2202	1	1	0	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0028	2202	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0029	2202	1	0	0	1	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0030	2170	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNKL_chr16_1358205_1419704	0/0	c0031	2202	1	0	1	0	0	0	copy fasta	UNKL	chr16	1358205	1419704
UNK_chr17_75779806_75830799	0/0	c0001	2433	132	17	30	64	7	14	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/1	c0002	2433	85	32	12	29	3	8	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0003	2433	73	12	7	49	0	5	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0004	2433	11	11	0	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0005	2433	10	0	0	10	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0006	2433	7	6	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0007	2433	6	0	0	6	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0008	2433	5	4	1	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0009	2433	5	1	4	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0010	2433	5	0	2	1	2	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0011	2433	3	3	0	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	1/0	c0012	2433	2	0	1	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0013	2433	2	2	0	0	0	0	copy fasta	UNK	chr17	75779806	75830799