JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UNK_chr17_75779806_75830799	0/0	c0014	2433	1	1	0	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0015	2433	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0016	2433	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0017	2433	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0018	2433	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0019	2433	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0020	2433	1	0	0	0	0	1	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0021	2433	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0022	2433	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0023	2433	1	0	1	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0024	2433	1	0	0	1	0	0	copy fasta	UNK	chr17	75779806	75830799
UNK_chr17_75779806_75830799	0/0	c0025	2433	1	1	0	0	0	0	copy fasta	UNK	chr17	75779806	75830799
UPB1_chr22_24490332_24533390	1/1	c0001	1155	328	84	57	131	16	38	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0002	1155	7	0	0	7	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0003	1155	3	0	0	1	0	2	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0004	1155	2	2	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0005	1155	2	0	2	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0006	1155	2	2	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0007	1155	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0008	1155	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0009	1155	1	0	1	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0010	1155	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0011	1155	1	0	0	1	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0012	1155	1	0	1	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0013	1155	1	0	1	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPB1_chr22_24490332_24533390	0/0	c0014	1155	1	1	0	0	0	0	copy fasta	UPB1	chr22	24490332	24533390
UPF1_chr19_18826959_18873230	1/1	c0001	3357	335	65	51	161	11	45	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0002	3357	25	3	1	19	1	1	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0003	3357	11	8	1	0	1	1	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0004	3357	6	6	0	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0005	3357	4	4	0	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0006	3357	2	0	0	0	1	1	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0007	3357	1	1	0	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0008	3357	1	0	1	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0009	3357	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0010	3357	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0011	3357	1	0	1	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0012	3357	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0013	3357	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0014	3357	1	0	1	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0015	3357	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0016	3357	1	0	0	1	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF1_chr19_18826959_18873230	0/0	c0017	3357	1	1	0	0	0	0	copy fasta	UPF1	chr19	18826959	18873230
UPF2_chr10_11915022_12047809	1/1	c0001	3819	209	53	36	95	5	18	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0002	3819	100	25	16	52	1	6	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0003	3819	11	0	4	0	3	4	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0004	3819	4	4	0	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0005	3819	3	3	0	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0006	3819	2	0	1	0	1	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0007	3819	1	0	0	1	0	0	copy fasta	UPF2	chr10	11915022	12047809