JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BMP1_chr8_22160372_22206482	0/0	c0016	2193	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22206482	0/0	c0017	2193	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22206482
BMP1_chr8_22160372_22217326	1/0	c0001	2961	220	34	44	107	10	24	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0002	2961	56	10	5	31	4	6	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0003	2961	30	28	2	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0004	2961	21	2	0	18	0	1	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0005	2961	16	0	2	7	0	7	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0006	2961	10	0	6	3	1	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0007	2961	8	7	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0008	2961	5	2	1	0	1	1	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0009	2961	5	0	0	3	0	2	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0010	2961	4	1	0	3	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0011	2961	4	3	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0012	2961	4	2	2	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0013	2961	2	0	0	0	0	2	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0014	2961	2	0	0	2	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0015	2961	2	0	1	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0016	2961	2	2	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0017	2961	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0018	2961	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0019	2961	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0020	2961	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0021	2961	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0022	2961	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0023	2961	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0024	2961	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0025	2961	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/1	c0026	2961	1	0	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0027	2961	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0028	2961	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0029	2961	1	0	1	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0030	2961	1	1	0	0	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0031	2961	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0032	2961	1	0	0	0	0	1	copy fasta	BMP1	chr8	22160372	22217326
BMP1_chr8_22160372_22217326	0/0	c0033	2961	1	0	0	1	0	0	copy fasta	BMP1	chr8	22160372	22217326
BMP2K_chr4_78771350_78921365	1/1	c0001	3486	77	25	9	30	1	10	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0002	3486	48	0	1	43	1	3	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0003	3486	13	0	2	10	0	1	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0004	3489	13	13	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0005	3483	12	11	1	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0006	3486	8	7	1	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0007	3486	5	5	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0008	3489	4	4	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0009	3477	2	0	0	2	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0010	3486	2	0	0	0	1	1	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0011	3483	2	0	0	2	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0012	3486	2	2	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0013	3486	2	0	0	2	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0014	3471	2	2	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0015	3486	1	0	0	0	1	0	copy fasta	BMP2K	chr4	78771350	78921365