JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UPF2_chr10_11915022_12047809	0/0	c0008	3819	1	0	0	1	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0009	3819	1	1	0	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0010	3819	1	0	1	0	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF2_chr10_11915022_12047809	0/0	c0011	3819	1	0	0	1	0	0	copy fasta	UPF2	chr10	11915022	12047809
UPF3A_chr13_114276601_114310817	1/1	c0001	1431	295	26	57	171	13	26	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0002	1431	102	50	18	18	0	16	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0003	1431	23	1	1	17	0	4	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0004	1431	11	8	3	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0005	1428	2	0	0	2	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0006	1431	2	2	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0007	1431	2	0	1	0	1	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0008	1431	2	2	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0009	1431	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0010	1431	1	0	1	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0011	1428	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0012	1431	1	0	1	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0013	1431	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0014	1431	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0015	1431	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0016	1431	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0017	1431	1	1	0	0	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0018	1431	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3A_chr13_114276601_114310817	0/0	c0019	1431	1	0	0	1	0	0	copy fasta	UPF3A	chr13	114276601	114310817
UPF3B_chrX_119829022_119857963	1/1	c0001	1452	279	72	49	113	13	30	copy fasta	UPF3B	chrX	119829022	119857963
UPF3B_chrX_119829022_119857963	0/0	c0002	1452	1	1	0	0	0	0	copy fasta	UPF3B	chrX	119829022	119857963
UPF3B_chrX_119829022_119857963	0/0	c0003	1452	1	1	0	0	0	0	copy fasta	UPF3B	chrX	119829022	119857963
UPF3B_chrX_119829022_119857963	0/0	c0004	1453	1	0	0	1	0	0	copy fasta	UPF3B	chrX	119829022	119857963
UPK1A_chr19_35661517_35683481	0/1	c0001	777	146	35	33	62	1	14	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	1/0	c0002	777	122	10	31	59	7	14	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0003	777	52	28	2	5	3	14	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0004	777	50	6	8	30	2	4	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0005	777	25	0	0	25	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0006	777	8	8	0	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0007	777	5	0	0	5	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0008	777	4	4	0	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0009	777	2	2	0	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0010	777	1	0	1	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0011	777	1	0	1	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0012	777	1	0	0	0	0	1	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0013	777	1	0	0	0	1	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0014	777	1	1	0	0	0	0	copy fasta	UPK1A	chr19	35661517	35683481
UPK1A_chr19_35661517_35683481	0/0	c0015	777	1	0	0	0	0	1	copy fasta	UPK1A	chr19	35661517	35683481
UPK1B_chr3_119168598_119210143	0/1	c0001	783	334	75	62	155	12	29	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	1/0	c0002	783	52	14	12	22	0	3	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	c0003	783	26	0	0	26	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	c0004	783	4	4	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	c0005	783	3	3	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	c0006	783	1	0	0	1	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	c0007	783	1	1	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143
UPK1B_chr3_119168598_119210143	0/0	c0008	783	1	1	0	0	0	0	copy fasta	UPK1B	chr3	119168598	119210143