JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UPK2_chr11_118951298_118963559	1/1	c0001	555	298	48	62	155	9	22	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0002	555	78	31	10	20	1	16	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0003	555	10	8	2	0	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0004	555	3	0	0	0	2	1	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0005	555	3	0	0	3	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0006	555	2	2	0	0	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0007	555	1	0	0	1	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0008	555	1	0	0	0	0	1	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0009	555	1	0	0	1	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK2_chr11_118951298_118963559	0/0	c0010	555	1	1	0	0	0	0	copy fasta	UPK2	chr11	118951298	118963559
UPK3A_chr22_45279949_45300874	0/0	c0001	864	108	5	21	60	5	17	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0002	864	84	42	10	28	0	4	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0003	864	73	12	9	46	1	5	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0004	864	72	13	9	41	1	8	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0005	864	28	3	12	5	4	4	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/1	c0006	864	20	0	12	3	1	3	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0007	864	12	3	0	8	0	1	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0008	864	12	0	3	4	2	3	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0009	864	7	7	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	1/0	c0010	864	4	0	1	2	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0011	864	3	3	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0012	864	3	0	0	3	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0013	864	2	2	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0014	864	2	0	0	2	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0015	864	2	1	1	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0016	864	1	1	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0017	864	1	1	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0018	864	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0019	864	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0020	864	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0021	864	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0022	864	1	1	0	0	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0023	864	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0024	864	1	0	0	0	0	1	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0025	864	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0026	864	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3A_chr22_45279949_45300874	0/0	c0027	864	1	0	0	1	0	0	copy fasta	UPK3A	chr22	45279949	45300874
UPK3BL1_chr7_102632025_102647791	0/0	c0001	792	86	8	23	51	0	4	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0002	792	17	0	5	10	1	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0003	792	17	5	3	7	1	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0004	792	5	0	0	5	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0005	792	5	1	0	3	0	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0006	792	4	0	0	4	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0007	792	1	0	0	1	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0008	792	1	0	1	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0009	792	1	0	0	1	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0010	792	1	1	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0011	792	1	1	0	0	0	0	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL1_chr7_102632025_102647791	0/0	c0012	792	1	0	0	0	0	1	copy fasta	UPK3BL1	chr7	102632025	102647791
UPK3BL2_chr7_102532919_102548696	0/1	c0001	792	83	12	15	43	3	9	copy fasta	UPK3BL2	chr7	102532919	102548696