JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UPK3BL2_chr7_102532919_102548696	0/0	c0002	792	40	0	6	26	3	5	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	1/0	c0003	792	27	6	6	12	0	2	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0004	792	10	0	3	5	1	1	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0005	112	7	0	5	0	1	1	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0006	792	3	0	0	3	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0007	792	3	3	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0008	792	2	0	0	0	0	2	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0009	792	2	0	1	0	1	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0010	792	1	0	0	1	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0011	792	1	0	0	0	1	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0012	792	1	1	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0013	792	1	1	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3BL2_chr7_102532919_102548696	0/0	c0014	792	1	1	0	0	0	0	copy fasta	UPK3BL2	chr7	102532919	102548696
UPK3B_chr7_76505552_76521522	0/1	c0001	831	154	55	37	46	5	10	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0002	831	143	16	25	77	5	20	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0003	831	20	0	1	19	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	1/0	c0004	831	5	4	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0005	831	2	2	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0006	831	2	2	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0007	831	2	2	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0008	831	2	0	0	2	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0009	831	2	0	2	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0010	831	2	0	0	0	0	2	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0011	831	1	0	0	0	0	1	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0012	831	1	1	0	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0013	831	1	0	1	0	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0014	831	1	0	0	0	0	1	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0015	831	1	0	0	1	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPK3B_chr7_76505552_76521522	0/0	c0016	831	1	0	0	1	0	0	copy fasta	UPK3B	chr7	76505552	76521522
UPP1_chr7_48084265_48113736	1/1	c0001	933	407	77	75	196	12	45	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	c0002	933	12	11	1	0	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	c0003	933	4	4	0	0	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	c0004	933	1	0	0	1	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	c0005	933	1	1	0	0	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	c0006	933	1	0	0	0	0	1	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	c0007	933	1	1	0	0	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP1_chr7_48084265_48113736	0/0	c0008	933	1	0	0	1	0	0	copy fasta	UPP1	chr7	48084265	48113736
UPP2_chr2_158096876_158141154	1/1	c0001	954	259	56	58	108	9	26	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0002	954	65	28	5	27	2	3	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0003	954	7	5	2	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0004	954	3	0	3	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0005	954	2	2	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0006	954	2	2	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0007	629	1	0	0	0	1	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0008	954	1	0	0	1	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0009	954	1	0	0	0	0	1	copy fasta	UPP2	chr2	158096876	158141154
UPP2_chr2_158096876_158141154	0/0	c0010	954	1	1	0	0	0	0	copy fasta	UPP2	chr2	158096876	158141154
UPRT_chrX_75269085_75309885	0/1	c0001	930	241	61	56	84	9	30	copy fasta	UPRT	chrX	75269085	75309885
UPRT_chrX_75269085_75309885	1/0	c0002	930	16	13	2	0	0	0	copy fasta	UPRT	chrX	75269085	75309885
UQCC1_chr20_35297578_35416973	1/0	c0001	900	149	52	20	45	7	24	copy fasta	UQCC1	chr20	35297578	35416973