JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UQCC1_chr20_35297578_35416973	0/1	c0002	900	97	28	19	36	5	8	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	c0003	900	4	4	0	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	c0004	900	2	2	0	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	c0005	900	1	1	0	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	c0006	900	1	0	1	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	c0007	900	1	1	0	0	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC1_chr20_35297578_35416973	0/0	c0008	890	1	0	0	1	0	0	copy fasta	UQCC1	chr20	35297578	35416973
UQCC2_chr6_33691764_33716700	1/1	c0001	381	389	87	66	180	14	40	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	c0002	381	5	4	1	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	c0003	381	3	0	3	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	c0004	381	2	2	0	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	c0005	381	1	0	0	1	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	c0006	381	1	0	0	1	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC2_chr6_33691764_33716700	0/0	c0007	381	1	1	0	0	0	0	copy fasta	UQCC2	chr6	33691764	33716700
UQCC3_chr11_62666673_62678686	0/1	c0001	282	239	50	53	100	8	27	copy fasta	UQCC3	chr11	62666673	62678686
UQCC3_chr11_62666673_62678686	1/0	c0002	282	89	42	23	12	2	9	copy fasta	UQCC3	chr11	62666673	62678686
UQCC4_chr16_1414752_1425747	1/1	c0001	399	347	80	69	134	16	46	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	c0002	399	6	6	0	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	c0003	399	4	4	0	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	c0004	399	3	1	2	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	c0005	399	2	0	2	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC4_chr16_1414752_1425747	0/0	c0006	399	2	1	1	0	0	0	copy fasta	UQCC4	chr16	1414752	1425747
UQCC5_chr3_52531605_52546890	1/1	c0001	213	388	92	84	150	16	44	copy fasta	UQCC5	chr3	52531605	52546890
UQCC6_chr12_103945194_103962215	1/1	c0001	216	397	89	68	172	16	50	copy fasta	UQCC6	chr12	103945194	103962215
UQCC6_chr12_103945194_103962215	0/0	c0002	216	65	11	6	46	2	0	copy fasta	UQCC6	chr12	103945194	103962215
UQCR10_chr22_29762369_29775413	1/1	c0001	192	351	60	68	166	16	39	copy fasta	UQCR10	chr22	29762369	29775413
UQCR10_chr22_29762369_29775413	0/0	c0002	192	63	38	8	16	0	1	copy fasta	UQCR10	chr22	29762369	29775413
UQCR11_chr19_1592169_1610462	1/1	c0001	171	363	95	74	138	14	40	copy fasta	UQCR11	chr19	1592169	1610462
UQCR11_chr19_1592169_1610462	0/0	c0002	171	1	1	0	0	0	0	copy fasta	UQCR11	chr19	1592169	1610462
UQCRB_chr8_96217947_96240545	1/1	c0001	336	373	91	70	156	16	38	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	c0002	336	4	4	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	c0003	336	2	0	0	0	0	2	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	c0004	336	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	c0005	336	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	c0006	336	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	c0007	336	1	0	0	1	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRB_chr8_96217947_96240545	0/0	c0008	336	1	1	0	0	0	0	copy fasta	UQCRB	chr8	96217947	96240545
UQCRC1_chr3_48594002_48614646	1/1	c0001	1443	291	87	60	95	13	34	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	c0002	1443	7	0	0	7	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	c0003	1443	5	0	0	5	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	c0004	1443	2	1	1	0	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	c0005	1443	1	0	1	0	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	c0006	1443	1	0	0	0	1	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC1_chr3_48594002_48614646	0/0	c0007	1443	1	0	0	1	0	0	copy fasta	UQCRC1	chr3	48594002	48614646
UQCRC2_chr16_21948361_21988660	1/1	c0001	1362	263	62	49	121	3	26	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	c0002	1362	67	1	4	47	1	14	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	c0003	1362	18	16	2	0	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	c0004	1362	11	10	1	0	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	c0005	1362	2	0	0	2	0	0	copy fasta	UQCRC2	chr16	21948361	21988660
UQCRC2_chr16_21948361_21988660	0/0	c0006	1362	1	1	0	0	0	0	copy fasta	UQCRC2	chr16	21948361	21988660