JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
UQCRFS1_chr19_29200320_29218151	0/1	c0001	825	400	87	73	188	8	43	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	1/0	c0002	825	18	7	6	0	4	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	c0003	825	15	0	0	15	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	c0004	825	1	0	0	0	0	1	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	c0005	825	1	0	0	1	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRFS1_chr19_29200320_29218151	0/0	c0006	825	1	0	1	0	0	0	copy fasta	UQCRFS1	chr19	29200320	29218151
UQCRHL_chr1_15802374_15812649	0/0	c0001	276	311	58	62	139	14	38	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRHL_chr1_15802374_15812649	0/0	c0002	276	31	19	5	6	0	1	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRHL_chr1_15802374_15812649	0/0	c0003	276	19	11	2	0	1	5	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRHL_chr1_15802374_15812649	0/0	c0004	276	1	0	0	0	1	0	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRHL_chr1_15802374_15812649	0/0	c0005	276	1	0	0	1	0	0	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRHL_chr1_15802374_15812649	0/0	c0006	276	1	0	1	0	0	0	copy fasta	UQCRHL	chr1	15802374	15812649
UQCRH_chr1_46298698_46321776	1/1	c0001	276	414	91	76	198	11	36	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	c0002	276	18	0	5	0	3	10	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	c0003	276	1	1	0	0	0	0	copy fasta	UQCRH	chr1	46298698	46321776
UQCRH_chr1_46298698_46321776	0/0	c0004	276	1	0	1	0	0	0	copy fasta	UQCRH	chr1	46298698	46321776
UQCRQ_chr5_132861642_132873847	1/1	c0001	249	449	94	77	218	16	42	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	c0002	249	2	1	1	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
UQCRQ_chr5_132861642_132873847	0/0	c0003	249	1	1	0	0	0	0	copy fasta	UQCRQ	chr5	132861642	132873847
URAD_chr13_27972717_27993693	1/1	c0001	522	331	83	49	151	12	34	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	c0002	522	68	1	21	36	5	5	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	c0003	522	23	11	5	3	1	3	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	c0004	522	2	0	1	1	0	0	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	c0005	522	1	1	0	0	0	0	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	c0006	522	1	0	0	1	0	0	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	c0007	522	1	1	0	0	0	0	copy fasta	URAD	chr13	27972717	27993693
URAD_chr13_27972717_27993693	0/0	c0008	522	1	1	0	0	0	0	copy fasta	URAD	chr13	27972717	27993693
URB1_chr21_32306018_32398012	0/0	c0001	6816	73	2	19	34	5	13	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0002	6816	55	17	11	18	2	7	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/1	c0003	6816	40	20	10	6	1	2	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0004	6816	35	0	11	23	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0005	6816	19	2	0	13	2	2	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0006	6816	12	0	0	12	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0007	6816	11	0	0	10	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0008	6816	6	6	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0009	6816	6	6	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0010	6816	5	5	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0011	6816	5	0	0	5	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0012	6816	4	0	4	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0013	6816	4	4	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0014	6816	4	3	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0015	6816	3	0	0	3	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0016	6816	3	0	0	3	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0017	6816	3	3	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0018	6816	2	0	0	2	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0019	6816	2	0	0	2	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0020	6816	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0021	6816	2	0	0	2	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0022	6816	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0023	6816	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012