JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
URB1_chr21_32306018_32398012	0/0	c0024	6816	2	2	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0025	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0026	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0027	6816	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0028	6816	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0029	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0030	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0031	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0032	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0033	6816	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0034	6816	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0035	6816	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0036	6816	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0037	6816	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	1/0	c0038	6816	1	0	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0039	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0040	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0041	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0042	6816	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0043	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0044	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0045	6816	1	0	1	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0046	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0047	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0048	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0049	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0050	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0051	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0052	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0053	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0054	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0055	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0056	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0057	6816	1	0	0	1	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0058	6816	1	0	0	0	0	1	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0059	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB1_chr21_32306018_32398012	0/0	c0060	6816	1	1	0	0	0	0	copy fasta	URB1	chr21	32306018	32398012
URB2_chr1_229621247_229665200	0/1	c0001	4575	112	13	19	57	6	16	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0002	4575	90	11	17	56	1	5	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	1/0	c0003	4575	79	31	18	15	2	12	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0004	4575	23	6	4	12	1	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0005	4575	10	9	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0006	4575	5	5	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0007	4575	4	3	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0008	4575	3	0	0	3	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0009	4575	3	3	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0010	4575	3	3	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0011	4575	2	2	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0012	4575	2	2	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0013	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200