JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
URB2_chr1_229621247_229665200	0/0	c0014	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0015	4575	1	1	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0016	4575	1	0	0	0	0	1	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0017	4575	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0018	4575	1	1	0	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0019	4575	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0020	4575	1	0	0	0	0	1	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0021	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0022	4575	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0023	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0024	4575	1	0	0	0	0	1	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0025	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0026	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0027	4575	1	0	1	0	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0028	4575	1	0	0	0	0	1	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0029	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0030	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0031	4575	1	0	0	1	0	0	copy fasta	URB2	chr1	229621247	229665200
URB2_chr1_229621247_229665200	0/0	c0032	4575	1	0	0	0	0	1	copy fasta	URB2	chr1	229621247	229665200
URGCP_chr7_43870913_43911596	0/1	c0001	2796	160	34	35	75	4	11	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	1/0	c0002	2796	120	19	20	63	6	11	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0003	2796	54	8	8	37	1	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0004	2796	29	3	11	1	7	7	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0005	2796	8	8	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0006	2796	8	8	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0007	2796	5	5	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0008	2796	3	3	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0009	2796	3	2	1	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0010	2796	3	0	0	1	0	2	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0011	2796	1	0	0	1	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0012	2796	1	1	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0013	2796	1	0	0	0	0	1	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0014	2796	1	0	0	1	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0015	2796	1	1	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0016	2796	1	0	0	0	0	1	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0017	2796	1	1	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0018	2796	1	1	0	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0019	2796	1	0	1	0	0	0	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0020	2796	1	0	0	0	0	1	copy fasta	URGCP	chr7	43870913	43911596
URGCP_chr7_43870913_43911596	0/0	c0021	2796	1	0	0	1	0	0	copy fasta	URGCP	chr7	43870913	43911596
URI1_chr19_29937239_30021612	0/1	c0001	1605	197	41	40	82	10	23	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	1/0	c0002	1608	108	28	18	52	0	9	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	c0003	1608	13	13	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	c0004	1605	3	0	0	3	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	c0005	1605	2	2	0	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	c0006	1605	1	0	1	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	c0007	1605	1	0	0	0	0	1	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	c0008	1605	1	0	0	0	0	1	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	c0009	1608	1	0	1	0	0	0	copy fasta	URI1	chr19	29937239	30021612
URI1_chr19_29937239_30021612	0/0	c0010	1605	1	0	0	1	0	0	copy fasta	URI1	chr19	29937239	30021612