JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
URM1_chr9_128366374_128397016	1/1	c0001	306	343	85	44	166	10	36	copy fasta	URM1	chr9	128366374	128397016
URM1_chr9_128366374_128397016	0/0	c0002	306	1	1	0	0	0	0	copy fasta	URM1	chr9	128366374	128397016
UROC1_chr3_126476166_126522773	1/1	c0001	2031	183	39	27	92	6	17	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0002	2031	110	15	21	61	3	10	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0003	2031	22	4	8	0	2	8	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0004	2031	21	11	8	0	0	2	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0005	2031	10	6	3	0	0	1	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0006	2031	3	0	0	0	0	3	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0007	2031	3	3	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0008	2031	2	2	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0009	2031	2	0	0	2	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0010	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0011	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0012	2031	1	0	1	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0013	2031	1	0	1	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0014	2031	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0015	2031	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0016	2031	1	0	0	0	1	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0017	2031	1	0	0	0	1	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0018	2031	1	0	1	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0019	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0020	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0021	2031	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0022	2031	1	0	1	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0023	2031	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0024	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0025	2031	1	0	0	0	1	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0026	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0027	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0028	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0029	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0030	2031	1	0	0	0	0	1	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0031	2031	1	0	0	1	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0032	2031	1	1	0	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROC1_chr3_126476166_126522773	0/0	c0033	2031	1	0	1	0	0	0	copy fasta	UROC1	chr3	126476166	126522773
UROD_chr1_45007254_45020575	1/1	c0001	1104	348	77	66	148	15	40	copy fasta	UROD	chr1	45007254	45020575
UROD_chr1_45007254_45020575	0/0	c0002	1104	45	15	8	19	1	2	copy fasta	UROD	chr1	45007254	45020575
UROD_chr1_45007254_45020575	0/0	c0003	1104	7	0	0	7	0	0	copy fasta	UROD	chr1	45007254	45020575
UROS_chr10_125783586_125828258	1/0	c0001	798	392	83	67	190	14	37	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	c0002	798	9	0	1	6	0	2	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/1	c0003	798	3	0	0	0	0	2	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	c0004	798	1	1	0	0	0	0	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	c0005	798	1	1	0	0	0	0	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	c0006	798	1	0	0	0	0	1	copy fasta	UROS	chr10	125783586	125828258
UROS_chr10_125783586_125828258	0/0	c0007	798	1	1	0	0	0	0	copy fasta	UROS	chr10	125783586	125828258
USB1_chr16_57996407_58026618	1/1	c0001	798	306	90	50	121	14	29	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	c0002	798	24	0	6	13	0	5	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	c0003	798	3	3	0	0	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	c0004	798	1	0	0	1	0	0	copy fasta	USB1	chr16	57996407	58026618
USB1_chr16_57996407_58026618	0/0	c0005	798	1	0	0	1	0	0	copy fasta	USB1	chr16	57996407	58026618