JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USH1C_chr11_17488900_17549416	0/0	c0002	2700	46	2	11	21	4	8	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0003	2700	39	19	7	10	0	3	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0004	2700	26	0	4	20	1	1	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0005	2700	25	18	3	2	0	2	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0006	2700	22	0	6	10	1	5	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0007	2700	12	0	2	7	0	3	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0008	2700	11	1	2	6	0	2	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0009	2700	9	0	0	9	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0010	2700	9	0	2	5	2	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0011	2700	5	4	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0012	2700	5	1	0	0	1	3	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0013	2700	4	0	0	4	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0014	2700	3	2	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0015	2700	3	3	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0016	2700	2	0	0	2	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0017	2700	2	2	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0018	2700	2	0	0	1	0	1	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0019	2700	2	2	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0020	2700	2	2	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0021	2700	2	2	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0022	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0023	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0024	2700	1	0	0	0	0	1	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0025	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0026	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0027	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0028	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0029	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0030	2700	1	0	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0031	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0032	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0033	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0034	2700	1	0	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0035	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0036	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0037	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0038	2700	1	0	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0039	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0040	2700	1	0	0	1	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0041	2700	1	0	0	0	0	1	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0042	2700	1	0	1	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0043	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0044	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0045	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0046	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0047	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1C_chr11_17488900_17549416	0/0	c0048	2700	1	1	0	0	0	0	copy fasta	USH1C	chr11	17488900	17549416
USH1G_chr17_74911083_74928255	1/1	c0001	1386	397	83	69	180	18	45	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0002	1386	13	12	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0003	1386	2	0	0	2	0	0	copy fasta	USH1G	chr17	74911083	74928255