JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BMP2K_chr4_78771350_78921365	0/0	c0016	3486	1	0	0	0	0	1	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0017	3486	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0018	3486	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0019	3486	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0020	3489	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0021	3486	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0022	3486	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0023	3486	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0024	3486	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0025	3470	1	0	0	1	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2K_chr4_78771350_78921365	0/0	c0026	3471	1	1	0	0	0	0	copy fasta	BMP2K	chr4	78771350	78921365
BMP2_chr20_6762686_6785246	0/1	c0001	1191	319	83	44	157	12	22	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	1/0	c0002	1191	85	4	22	38	5	15	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0003	1191	26	0	1	21	0	4	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0004	1191	12	2	8	0	1	1	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0005	1191	7	6	0	1	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0006	1191	4	0	0	4	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0007	1191	2	0	0	2	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0008	1191	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0009	1191	1	0	0	1	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0010	1191	1	0	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0011	1191	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0012	1191	1	0	0	1	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0013	1191	1	0	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0014	1191	1	1	0	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0015	1191	1	0	0	1	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP2_chr20_6762686_6785246	0/0	c0016	1191	1	0	1	0	0	0	copy fasta	BMP2	chr20	6762686	6785246
BMP3_chr4_81025708_81062627	0/1	c0001	1419	278	61	53	122	13	28	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0002	1419	65	8	13	29	1	14	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0003	1419	12	9	3	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0004	1419	5	5	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0005	1419	4	4	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0006	1419	3	1	2	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0007	1419	3	0	0	3	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0008	1419	2	2	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0009	1419	2	2	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0010	1419	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0011	1419	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0012	1419	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	1/0	c0013	1419	1	0	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0014	1419	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0015	1419	1	0	1	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0016	1419	1	0	0	1	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP3_chr4_81025708_81062627	0/0	c0017	1419	1	1	0	0	0	0	copy fasta	BMP3	chr4	81025708	81062627
BMP4_chr14_53944736_53961825	1/0	c0001	1227	325	79	51	156	9	29	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/1	c0002	1227	125	15	33	54	7	15	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	c0003	1227	2	2	0	0	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	c0004	1227	1	0	0	1	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP4_chr14_53944736_53961825	0/0	c0005	1227	1	0	0	1	0	0	copy fasta	BMP4	chr14	53944736	53961825
BMP5_chr6_55748653_55880590	1/0	c0001	1365	140	33	15	73	1	17	copy fasta	BMP5	chr6	55748653	55880590