JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USH1G_chr17_74911083_74928255	0/0	c0004	1386	2	0	2	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0005	1386	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0006	1386	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0007	1386	1	0	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0008	1386	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0009	1386	1	0	0	0	0	1	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0011	1386	1	0	0	1	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH1G_chr17_74911083_74928255	0/0	c0012	1386	1	0	1	0	0	0	copy fasta	USH1G	chr17	74911083	74928255
USH2A_chr1_215617891_216428448	0/0	c0001	15609	2	0	2	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0002	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0003	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0004	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0005	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0006	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0007	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0008	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0009	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0010	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0011	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0012	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0013	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0014	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0015	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0016	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0017	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0018	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0019	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0020	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0021	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0022	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0023	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0024	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0025	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0026	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0027	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0028	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0029	15609	1	0	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0030	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0031	15609	1	0	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0032	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0033	15609	1	0	0	0	0	1	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0034	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0035	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0036	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0037	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0038	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0039	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0040	15609	1	0	0	0	0	1	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0041	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448