JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USH2A_chr1_215617891_216428448	0/0	c0042	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0043	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0044	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0045	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0046	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0047	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0048	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0049	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0050	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0051	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0052	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0053	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0054	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0055	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0056	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0057	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0058	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0059	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0060	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0061	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	1/0	c0062	15609	1	0	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0063	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0064	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0065	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0066	15609	1	1	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/1	c0067	15609	1	0	0	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0068	15609	1	0	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0069	15609	1	0	0	0	1	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0070	15609	1	0	0	0	0	1	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0071	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0072	15609	1	0	0	0	0	1	copy fasta	USH2A	chr1	215617891	216428448
USH2A_chr1_215617891_216428448	0/0	c0073	15609	1	0	1	0	0	0	copy fasta	USH2A	chr1	215617891	216428448
USHBP1_chr19_17244171_17269745	0/1	c0001	2112	147	24	30	76	3	13	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0002	2112	94	24	16	44	4	6	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	1/0	c0003	2112	57	0	11	33	3	9	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0004	2112	24	12	4	0	3	5	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0005	2112	12	0	0	12	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0006	2112	9	0	5	0	0	4	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0007	2112	8	7	1	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0008	2112	7	5	2	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0009	2112	5	4	1	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0010	2112	5	0	2	0	0	3	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0011	2112	5	3	0	1	1	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0012	2112	4	0	0	0	2	2	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0013	2112	4	4	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0014	2112	3	3	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0015	2112	2	2	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0016	2112	2	1	0	0	0	1	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0017	2112	2	2	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0018	2112	2	0	0	0	0	2	copy fasta	USHBP1	chr19	17244171	17269745