JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USHBP1_chr19_17244171_17269745	0/0	c0019	2112	2	0	1	0	0	1	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0020	2112	2	2	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0021	2112	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0022	2112	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0023	2112	1	0	1	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0024	2112	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0025	2112	1	0	0	0	1	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0026	2112	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0027	2112	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0028	2112	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0029	2112	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0030	2112	1	0	0	0	1	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0031	2112	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0032	2112	1	1	0	0	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0033	2112	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0034	2112	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0035	2112	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USHBP1_chr19_17244171_17269745	0/0	c0036	2112	1	0	0	1	0	0	copy fasta	USHBP1	chr19	17244171	17269745
USO1_chr4_75719577_75819286	0/0	c0001	2889	107	19	30	37	4	17	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0002	2889	86	41	9	25	0	11	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	1/0	c0003	2889	42	17	14	1	4	5	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/1	c0004	2889	31	0	9	12	5	4	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0005	2889	4	0	0	0	0	4	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0006	2889	3	1	0	1	1	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0007	2889	2	0	1	0	0	1	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0008	2889	2	0	0	2	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0009	2889	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0010	2889	1	0	1	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0011	2889	1	0	0	1	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0012	2889	1	0	1	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0013	2889	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0014	2889	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0015	2889	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0016	2889	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0017	2889	1	1	0	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0018	2889	1	0	0	1	0	0	copy fasta	USO1	chr4	75719577	75819286
USO1_chr4_75719577_75819286	0/0	c0019	2889	1	0	1	0	0	0	copy fasta	USO1	chr4	75719577	75819286
USP10_chr16_84695000_84784922	0/0	c0001	2397	72	9	7	46	2	8	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0002	2397	61	0	5	51	3	2	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0003	2397	60	14	17	22	2	5	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0004	2397	58	9	0	45	0	4	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0005	2397	40	0	13	24	1	2	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0006	2397	39	12	7	11	8	1	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	1/1	c0007	2397	33	22	8	0	1	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0008	2397	17	2	3	8	1	3	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0009	2397	6	0	0	1	0	5	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0010	2397	5	5	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0011	2397	5	5	0	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0012	2397	3	1	2	0	0	0	copy fasta	USP10	chr16	84695000	84784922
USP10_chr16_84695000_84784922	0/0	c0013	2397	3	0	1	0	0	2	copy fasta	USP10	chr16	84695000	84784922