JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP17L18_chr4_9243630_9255222	0/0	c0058	1593	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0059	1593	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0060	1593	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0061	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0062	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0063	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0064	1593	1	0	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0065	1593	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0066	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0067	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0068	1593	1	0	0	0	1	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0069	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0070	1593	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0071	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0072	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0073	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0074	1593	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0075	1593	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0076	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0077	1593	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0078	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0079	1593	1	0	0	0	0	1	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0080	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0081	1593	1	0	1	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0082	1593	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0083	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0084	1593	1	1	0	0	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0085	1593	1	0	0	0	1	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L18_chr4_9243630_9255222	0/0	c0086	1593	1	0	0	1	0	0	copy fasta	USP17L18	chr4	9243630	9255222
USP17L19_chr4_9248378_9259970	0/0	c0001	1593	24	4	2	12	0	6	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0002	1593	17	3	1	10	1	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0003	1593	16	3	7	3	1	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0004	1593	14	2	4	5	1	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0005	1593	9	2	2	5	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0006	1593	8	0	1	2	1	4	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0007	1593	8	0	1	5	0	2	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0008	1593	7	1	1	4	1	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0009	1593	6	0	0	6	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0010	1593	5	0	2	2	1	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0011	1593	5	0	4	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0012	1593	4	0	2	1	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0013	1593	3	0	1	1	1	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0014	1593	3	3	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0015	1593	3	0	0	3	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0016	1593	3	1	0	1	1	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0017	1593	3	0	0	2	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0018	1593	2	2	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0019	1593	2	0	0	0	2	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0020	1593	2	0	0	2	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0021	1593	2	0	0	0	0	2	copy fasta	USP17L19	chr4	9248378	9259970