Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACACA_chr17_37079992_37411836	0/0	c0006	7152	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0007	7152	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0008	7152	1	1	0	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0009	7152	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0010	7152	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0011	7152	1	0	1	0	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0012	7152	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0013	7152	1	0	0	0	0	1	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0014	7152	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0015	7152	1	0	0	0	0	1	copy fasta	ACACA	chr17	37079992	37411836
ACACA_chr17_37079992_37411836	0/0	c0016	7152	1	0	0	1	0	0	copy fasta	ACACA	chr17	37079992	37411836
ACACB_chr12_109111587_109273226	0/0	c0001	7377	22	0	4	18	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0002	7377	18	4	5	8	1	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0003	7377	15	3	1	5	1	5	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0004	7377	12	2	0	10	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0005	7377	10	0	1	8	1	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0006	7377	9	3	2	2	0	2	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	1/0	c0007	7377	8	5	0	2	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0008	7377	7	0	1	6	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0009	7377	7	0	0	7	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0010	7377	5	2	0	3	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0011	7377	5	2	0	1	1	1	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0012	7377	5	0	0	5	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0013	7377	5	0	0	4	1	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0014	7377	5	0	0	1	0	4	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0015	7377	5	5	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0016	7377	4	4	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0017	7377	4	2	0	1	0	1	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0018	7377	4	0	4	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0019	7377	4	0	1	2	0	1	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0020	7377	4	0	0	3	0	1	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0021	7377	4	0	0	4	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0022	7377	4	4	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0023	7377	4	0	2	0	2	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0024	7377	4	0	1	3	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0025	7377	4	0	4	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0026	7377	3	0	0	2	1	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0027	7377	3	0	2	1	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0028	7377	3	0	0	3	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0029	7377	3	1	0	2	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/1	c0030	7377	3	2	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0031	7377	3	3	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0032	7377	2	2	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0033	7377	2	0	2	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0034	7377	2	0	0	0	2	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0035	7377	2	0	0	0	0	2	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0036	7377	2	0	0	2	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0037	7377	2	2	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0038	7377	2	1	0	0	0	1	copy fasta	ACACB	chr12	109111587	109273226
ACACB_chr12_109111587_109273226	0/0	c0039	7377	2	2	0	0	0	0	copy fasta	ACACB	chr12	109111587	109273226