JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BMP5_chr6_55748653_55880590	0/1	c0002	1365	127	52	29	21	9	15	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0003	1365	24	0	5	16	2	1	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0004	1365	13	0	1	11	0	1	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0005	1365	3	0	1	0	0	2	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0006	1365	3	3	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0007	1365	2	2	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0008	1365	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0009	1365	1	0	0	0	0	1	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0010	1365	1	0	0	1	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0011	1365	1	0	1	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0012	1365	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0013	1365	1	0	0	0	0	1	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0014	1365	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP5_chr6_55748653_55880590	0/0	c0015	1365	1	1	0	0	0	0	copy fasta	BMP5	chr6	55748653	55880590
BMP6_chr6_7721099_7886728	0/1	c0001	1542	119	48	25	42	1	2	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	1/0	c0002	1542	67	11	23	20	5	7	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0003	1542	36	3	8	21	1	3	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0004	1542	30	3	7	7	3	10	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0005	1545	21	6	1	13	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0006	1545	6	1	0	3	0	2	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0007	1542	5	5	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0008	1542	4	4	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0009	1542	3	2	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0010	1542	3	0	2	0	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0011	1542	3	0	0	2	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0012	1542	2	2	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0013	1542	1	0	0	0	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0014	1542	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0015	1542	1	0	0	0	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0016	1542	1	0	1	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0017	1545	1	0	0	0	0	1	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0018	1542	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0019	1542	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0020	1542	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP6_chr6_7721099_7886728	0/0	c0021	1542	1	1	0	0	0	0	copy fasta	BMP6	chr6	7721099	7886728
BMP7_chr20_57163753_57271641	1/1	c0001	1296	246	74	58	68	13	31	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	c0002	1296	15	12	3	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	c0003	1296	2	0	0	0	1	1	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	c0004	1296	2	0	0	0	0	2	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	c0005	1296	2	2	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	c0006	1296	2	2	0	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	c0007	1296	1	0	0	1	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	c0008	1296	1	0	0	1	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP7_chr20_57163753_57271641	0/0	c0009	1296	1	0	1	0	0	0	copy fasta	BMP7	chr20	57163753	57271641
BMP8A_chr1_39486636_39534869	0/0	c0001	1209	141	21	24	72	2	22	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0002	1209	49	1	12	27	6	3	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0003	1209	42	0	5	37	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0004	1209	22	20	2	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0005	1209	20	0	10	3	2	5	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0006	1209	19	17	1	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869