JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP17L19_chr4_9248378_9259970	0/0	c0022	1593	2	0	0	0	2	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0023	1593	2	0	0	2	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0024	1593	2	0	0	2	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0025	1593	2	0	0	2	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0026	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0027	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0028	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0029	1593	1	0	0	0	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0030	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0031	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0032	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0033	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0034	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0035	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0036	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0037	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0038	1593	1	0	0	0	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0039	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0040	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0041	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0042	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0043	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0044	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0045	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0046	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0047	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0048	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0049	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0050	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0051	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0052	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0053	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0054	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0055	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0056	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0057	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0058	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0059	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0060	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0061	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0062	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0063	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0064	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0065	1593	1	0	0	1	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0066	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0067	1593	1	1	0	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0068	1593	1	0	0	0	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0069	1593	1	0	0	0	0	1	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0070	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970
USP17L19_chr4_9248378_9259970	0/0	c0071	1593	1	0	1	0	0	0	copy fasta	USP17L19	chr4	9248378	9259970