JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP17L21_chr4_9257872_9269464	0/0	c0002	1593	10	1	6	2	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0003	1593	10	3	1	4	0	2	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0004	1593	9	1	4	4	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0005	1593	6	0	0	5	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0006	1593	6	0	1	5	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0007	1593	4	0	2	2	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0008	1593	4	0	0	4	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0009	1593	4	1	1	0	0	2	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0010	1593	3	0	1	1	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0011	1593	3	0	2	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0012	1593	3	0	0	2	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0013	1593	2	0	0	1	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0014	1593	2	2	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0015	1593	2	0	0	0	1	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0016	1593	2	0	0	1	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0017	1593	2	2	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0018	1593	2	0	1	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0019	1593	2	0	0	2	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0020	1593	2	0	0	2	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0021	1593	2	0	0	2	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0022	1593	2	0	1	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0023	1593	2	0	1	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0024	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0025	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0026	1593	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0027	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0028	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0029	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0030	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0031	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0032	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0033	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0034	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0035	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0036	1593	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0037	1593	1	0	0	0	0	1	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0038	1593	1	0	0	0	1	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0039	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0040	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0041	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0042	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0043	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0044	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0045	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0046	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0047	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0048	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0049	1593	1	1	0	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0050	1593	1	0	1	0	0	0	copy fasta	USP17L21	chr4	9257872	9269464
USP17L21_chr4_9257872_9269464	0/0	c0051	1593	1	0	0	1	0	0	copy fasta	USP17L21	chr4	9257872	9269464