JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BMP8A_chr1_39486636_39534869	0/0	c0007	1209	8	0	1	0	2	5	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0008	1209	8	4	2	0	0	2	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/1	c0009	1209	7	1	3	0	2	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0010	1209	5	5	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0011	1209	4	0	0	4	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0012	1209	4	4	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0013	1209	3	3	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0014	1209	3	0	0	3	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0015	1209	2	2	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	1/0	c0016	1209	2	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0017	1209	2	0	0	0	1	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0018	1209	2	2	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0019	1209	2	0	0	0	0	2	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0020	1209	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0021	1209	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0022	1209	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0023	1209	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0024	1209	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0025	1209	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0026	1209	1	0	0	0	1	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0027	1209	1	0	1	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0028	1209	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0029	1209	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0030	1209	1	0	0	1	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0031	1209	1	0	0	0	0	1	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0032	1209	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0033	1209	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0034	1209	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0035	1209	1	0	1	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8A_chr1_39486636_39534869	0/0	c0036	1209	1	1	0	0	0	0	copy fasta	BMP8A	chr1	39486636	39534869
BMP8B_chr1_39752182_39793865	1/0	c0001	1209	151	21	18	91	4	16	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/1	c0002	1209	85	20	22	30	4	8	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0003	1209	26	2	10	7	1	6	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0004	1209	24	0	3	18	1	2	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0005	1209	20	1	2	10	4	3	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0006	1209	18	0	1	13	1	3	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0007	1209	18	17	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0008	1209	17	16	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0009	1209	11	0	0	11	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0010	1209	9	0	0	9	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0011	1209	9	9	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0012	1209	8	0	0	8	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0013	1209	8	1	1	6	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0014	1209	7	0	5	0	1	1	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0015	1209	2	2	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0016	1209	1	0	0	0	0	1	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0017	1209	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0018	1209	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0019	1209	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0020	1209	1	0	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865