JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP20_chr9_129830458_129886828	0/0	c0026	2742	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0027	2742	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0028	2745	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0029	2742	1	0	0	0	1	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0030	2742	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0031	2742	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0032	2742	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0033	2742	1	0	0	1	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0034	2745	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0035	2745	1	0	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0036	2745	1	1	0	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP20_chr9_129830458_129886828	0/0	c0037	2742	1	0	1	0	0	0	copy fasta	USP20	chr9	129830458	129886828
USP21_chr1_161154500_161170723	1/1	c0001	1698	360	75	61	172	17	33	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	c0002	1698	2	0	0	2	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	c0003	1698	2	0	0	2	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	c0004	1698	2	0	2	0	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	c0005	1698	2	0	0	2	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	c0006	1698	2	1	1	0	0	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	c0007	1698	1	0	0	0	1	0	copy fasta	USP21	chr1	161154500	161170723
USP21_chr1_161154500_161170723	0/0	c0008	1698	1	0	0	0	0	1	copy fasta	USP21	chr1	161154500	161170723
USP22_chr17_20994596_21048011	1/1	c0001	1578	147	48	26	59	5	7	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	c0002	1578	140	39	38	45	2	16	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	c0003	1578	61	1	7	38	4	11	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	c0004	1578	2	2	0	0	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	c0005	1578	2	0	1	0	0	1	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	c0006	1578	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	c0007	1578	1	0	0	0	1	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	c0008	1578	1	0	0	1	0	0	copy fasta	USP22	chr17	20994596	21048011
USP22_chr17_20994596_21048011	0/0	c0009	1578	1	0	0	0	0	1	copy fasta	USP22	chr17	20994596	21048011
USP24_chr1_55061359_55220364	0/1	c0001	7863	80	16	18	32	4	9	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0002	7863	41	20	3	15	0	3	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0003	7863	12	1	5	2	2	2	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	1/0	c0004	7863	12	8	3	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0005	7863	12	11	1	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0006	7863	11	2	1	7	1	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0007	7863	8	8	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0008	7866	5	5	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0009	7863	3	3	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0010	7863	2	1	1	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0011	7866	2	0	1	0	1	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0012	7863	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0013	7863	1	0	0	1	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0014	7863	1	0	0	1	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0015	7863	1	0	1	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0016	7863	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0017	7863	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0018	7863	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0019	7863	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0020	7863	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364
USP24_chr1_55061359_55220364	0/0	c0021	7863	1	1	0	0	0	0	copy fasta	USP24	chr1	55061359	55220364