JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP25_chr21_15724982_15885064	1/1	c0001	3378	123	32	18	54	6	11	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0002	3378	42	28	4	8	0	2	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0003	3378	17	0	0	13	0	4	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0004	3378	4	3	1	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0005	3378	4	3	1	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0006	3378	2	2	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0007	3378	2	2	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0008	3378	2	2	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0009	3378	1	1	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0010	3378	1	1	0	0	0	0	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0011	3378	1	0	0	0	0	1	copy fasta	USP25	chr21	15724982	15885064
USP25_chr21_15724982_15885064	0/0	c0012	3378	1	0	0	1	0	0	copy fasta	USP25	chr21	15724982	15885064
USP26_chrX_133018168_133102109	1/1	c0001	2742	143	38	22	65	3	13	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	c0002	2742	65	4	12	31	6	12	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	c0003	2745	37	9	0	25	0	3	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	c0004	2742	5	5	0	0	0	0	copy fasta	USP26	chrX	133018168	133102109
USP26_chrX_133018168_133102109	0/0	c0005	2742	2	0	0	0	2	0	copy fasta	USP26	chrX	133018168	133102109
USP27X_chrX_49874484_49887558	1/1	c0001	1317	267	63	52	117	5	28	copy fasta	USP27X	chrX	49874484	49887558
USP27X_chrX_49874484_49887558	0/0	c0002	1317	2	0	0	2	0	0	copy fasta	USP27X	chrX	49874484	49887558
USP28_chr11_113792875_113880572	0/1	c0001	3420	209	37	48	95	8	20	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	1/0	c0002	3420	90	24	11	45	2	7	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0003	3420	32	5	3	18	0	6	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0004	3420	6	6	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0005	3420	5	4	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0006	3420	4	4	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0007	3420	4	4	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0008	3420	2	0	0	2	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0009	3420	2	0	0	2	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0010	3420	2	0	0	2	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0011	3420	1	0	0	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0012	3420	1	0	0	1	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0013	3420	1	0	0	0	0	1	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0014	3420	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0015	3420	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0016	3420	1	0	1	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0017	3420	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP28_chr11_113792875_113880572	0/0	c0018	3420	1	1	0	0	0	0	copy fasta	USP28	chr11	113792875	113880572
USP29_chr19_57114985_57136926	0/0	c0001	2769	126	21	28	46	9	22	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0002	2769	101	6	13	81	0	1	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0003	2769	72	33	5	31	1	2	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/1	c0004	2769	66	20	12	18	2	13	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0005	2769	11	0	3	8	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	1/0	c0006	2769	8	1	4	0	2	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0007	2769	3	0	2	0	0	1	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0008	2769	3	3	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0009	2769	3	3	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0010	2769	3	0	0	3	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0011	2769	2	2	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0012	2769	2	1	1	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0013	2769	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926