JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP29_chr19_57114985_57136926	0/0	c0014	2769	1	0	0	0	1	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0015	2769	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0016	2769	1	0	1	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0017	2769	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0018	2769	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0019	2769	1	0	0	0	1	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0020	2769	1	0	0	0	0	1	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0021	2769	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0022	2769	1	1	0	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0023	2769	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0024	2769	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0025	2769	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0026	2769	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0027	2769	1	0	0	1	0	0	copy fasta	USP29	chr19	57114985	57136926
USP29_chr19_57114985_57136926	0/0	c0028	2769	1	0	1	0	0	0	copy fasta	USP29	chr19	57114985	57136926
USP2_chr11_119350215_119386690	0/1	c0001	1818	101	19	14	38	10	19	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	1/0	c0002	1818	27	11	7	2	2	4	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0003	1818	27	12	9	4	1	1	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0004	1818	25	14	4	4	1	2	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0005	1818	12	7	1	4	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0006	1818	2	0	0	2	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0007	1818	2	1	1	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0008	1818	1	0	0	1	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0009	1818	1	0	0	1	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0010	1818	1	0	1	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0011	1818	1	0	1	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0012	1818	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP2_chr11_119350215_119386690	0/0	c0013	1818	1	1	0	0	0	0	copy fasta	USP2	chr11	119350215	119386690
USP30_chr12_109047576_109093023	0/0	c0001	1554	268	54	46	126	11	31	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	1/1	c0002	1554	52	28	11	4	3	4	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0003	1554	38	4	0	29	4	1	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0004	1554	23	0	0	23	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0005	1554	5	5	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0006	1554	3	0	0	3	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0007	1554	2	2	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0008	1554	2	0	1	0	0	1	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0009	1554	1	1	0	0	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0010	1554	1	0	0	1	0	0	copy fasta	USP30	chr12	109047576	109093023
USP30_chr12_109047576_109093023	0/0	c0011	1554	1	0	0	0	0	1	copy fasta	USP30	chr12	109047576	109093023
USP31_chr16_23056406_23154452	1/0	c0001	4059	118	50	21	32	2	12	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0002	4059	42	1	17	17	4	3	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/1	c0003	4059	34	11	10	5	3	4	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0004	4059	12	2	2	8	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0005	4059	6	3	0	3	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0006	4065	5	5	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0007	4059	4	0	0	4	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0008	4059	3	0	0	1	1	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0009	4059	3	0	1	0	0	2	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0010	4059	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0011	4059	2	2	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452