JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP31_chr16_23056406_23154452	0/0	c0012	4059	2	1	1	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0013	4059	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0014	4059	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0015	4059	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0016	4059	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0017	4059	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0018	4059	1	0	0	0	0	1	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0019	4059	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0020	4059	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0021	4059	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0022	4059	1	0	0	1	0	0	copy fasta	USP31	chr16	23056406	23154452
USP31_chr16_23056406_23154452	0/0	c0023	4059	1	1	0	0	0	0	copy fasta	USP31	chr16	23056406	23154452
USP32_chr17_60172327_60397133	1/1	c0001	4815	138	63	30	37	0	6	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0002	4815	4	4	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0003	4815	2	1	1	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0004	4815	2	2	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0005	4815	1	0	0	1	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0006	4815	1	0	1	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0007	4815	1	0	0	1	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0008	4815	1	1	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0009	4815	1	0	0	1	0	0	copy fasta	USP32	chr17	60172327	60397133
USP32_chr17_60172327_60397133	0/0	c0010	4815	1	1	0	0	0	0	copy fasta	USP32	chr17	60172327	60397133
USP33_chr1_77690987_77764852	1/1	c0001	2736	141	19	27	72	6	15	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0002	2736	109	35	14	45	1	14	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0003	2736	24	11	0	13	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0004	2736	12	12	0	0	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0005	2736	8	2	4	0	1	1	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0006	2736	6	6	0	0	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0007	2736	5	0	0	5	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0008	2736	3	0	0	3	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0009	2736	2	2	0	0	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0010	2736	1	1	0	0	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0011	2736	1	0	1	0	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0012	2736	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0013	2736	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0014	2736	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0015	2736	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0016	2736	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP33_chr1_77690987_77764852	0/0	c0017	2736	1	0	0	1	0	0	copy fasta	USP33	chr1	77690987	77764852
USP34_chr2_61182463_61476087	0/0	c0001	10641	81	19	10	40	2	10	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/1	c0002	10641	79	7	20	41	2	8	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0003	10641	49	1	4	33	2	9	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0004	10641	21	11	3	5	1	1	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0005	10641	18	17	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0006	10641	9	0	6	2	0	1	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0007	10641	7	0	0	7	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0008	10641	5	5	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0009	10641	5	5	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0010	10641	3	0	1	2	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0011	10641	3	2	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087