JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BMP8B_chr1_39752182_39793865	0/0	c0021	1209	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0022	1209	1	0	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0023	1209	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0024	1209	1	0	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0025	1209	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0026	1209	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0027	1209	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0028	1209	1	0	1	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0029	1209	1	0	0	0	0	1	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0030	1209	1	0	0	0	0	1	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0031	1209	1	0	0	1	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMP8B_chr1_39752182_39793865	0/0	c0032	1209	1	1	0	0	0	0	copy fasta	BMP8B	chr1	39752182	39793865
BMPER_chr7_33900539_34161427	0/0	c0001	2058	86	32	11	30	2	11	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/1	c0002	2058	53	11	13	18	2	8	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0003	2058	30	10	7	5	2	6	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	1/0	c0004	2058	13	10	1	0	0	1	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0005	2058	13	1	6	3	2	1	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0006	2058	12	1	0	10	0	1	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0007	2058	4	3	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0008	2058	3	2	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0009	2058	2	0	2	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0010	2058	2	2	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0011	2058	2	2	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0012	2058	2	2	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0013	2058	1	0	0	1	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0014	2058	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0015	2058	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0016	2058	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0017	2058	1	0	0	1	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0018	2058	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0019	2058	1	1	0	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0020	2058	1	0	0	1	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0021	2058	1	0	0	1	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPER_chr7_33900539_34161427	0/0	c0022	2058	1	0	1	0	0	0	copy fasta	BMPER	chr7	33900539	34161427
BMPR1A_chr10_86751619_86932969	1/1	c0001	1599	131	24	32	43	8	22	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	c0002	1599	121	42	21	42	6	10	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	c0003	1599	19	18	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	c0004	1599	3	0	3	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	c0005	1599	1	0	0	1	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	c0006	1599	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	c0007	1599	1	1	0	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1A_chr10_86751619_86932969	0/0	c0008	1599	1	0	1	0	0	0	copy fasta	BMPR1A	chr10	86751619	86932969
BMPR1B_chr4_94752955_95163448	1/1	c0001	1509	219	71	50	60	10	26	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	c0002	1509	4	4	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	c0003	1509	1	1	0	0	0	0	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	c0004	1509	1	0	0	0	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR1B_chr4_94752955_95163448	0/0	c0005	1509	1	0	0	0	0	1	copy fasta	BMPR1B	chr4	94752955	95163448
BMPR2_chr2_202371327_202572749	1/1	c0001	3117	181	72	42	42	6	17	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	c0002	3117	36	0	9	15	2	10	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	c0003	3117	2	0	2	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749