JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP34_chr2_61182463_61476087	0/0	c0012	10641	3	3	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0013	10641	3	0	1	0	2	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0014	10641	2	0	0	2	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0015	10641	2	2	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0016	10641	2	2	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0017	10641	2	0	0	0	2	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0018	10641	1	0	0	0	1	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0019	10641	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0020	10641	1	0	0	0	0	1	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0021	10641	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0022	10641	1	0	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0023	10641	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0024	10641	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0025	10641	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0026	10641	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0027	10641	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0028	10641	1	0	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	1/0	c0029	10641	1	0	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0030	10641	1	1	0	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0031	10641	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0032	10641	1	0	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0033	10641	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0034	10641	1	0	0	1	0	0	copy fasta	USP34	chr2	61182463	61476087
USP34_chr2_61182463_61476087	0/0	c0035	10641	1	0	1	0	0	0	copy fasta	USP34	chr2	61182463	61476087
USP35_chr11_78183919_78220232	0/0	c0001	3057	130	24	34	50	4	18	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0002	3057	101	3	22	66	0	10	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	1/0	c0003	3057	70	0	4	52	0	13	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0004	3057	11	6	0	4	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0005	3057	9	2	3	2	1	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0006	3057	8	8	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0007	3057	8	0	3	0	4	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0008	3057	7	7	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/1	c0009	3057	7	3	0	1	2	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0010	3057	7	7	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0011	3057	6	6	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0012	3057	6	5	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0013	3054	4	4	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0014	3057	3	2	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0015	3057	3	3	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0016	3057	3	2	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0017	3057	2	2	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0018	3057	2	1	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0019	3057	2	0	1	0	1	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0020	3057	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0021	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0022	3057	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0023	3057	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0024	3057	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0025	3057	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0026	3057	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232