JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP35_chr11_78183919_78220232	0/0	c0027	3057	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0028	3057	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0029	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0030	3057	1	0	0	0	1	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0031	3057	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0032	3057	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0033	3057	1	0	0	1	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0034	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0035	3057	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0036	3057	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0037	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0038	3057	1	0	0	0	1	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0039	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0040	3057	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0041	3057	1	0	0	0	0	1	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0042	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0043	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0044	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0045	3057	1	1	0	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP35_chr11_78183919_78220232	0/0	c0046	3057	1	0	1	0	0	0	copy fasta	USP35	chr11	78183919	78220232
USP36_chr17_78790652_78845814	1/0	c0001	3372	86	16	20	42	2	5	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0002	3366	70	2	17	37	4	10	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/1	c0003	3372	46	4	11	21	2	7	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0004	3372	17	1	0	16	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0005	3372	13	11	1	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0006	3372	13	0	0	8	0	5	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0007	3372	9	0	0	9	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0008	3366	8	1	3	0	2	2	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0009	3372	8	8	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0010	3372	7	5	2	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0011	3366	5	0	0	5	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0012	3372	5	5	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0013	3366	4	0	1	0	1	2	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0014	3366	4	0	0	3	1	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0015	3372	4	4	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0016	3372	4	4	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0017	3372	3	3	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0018	3366	3	0	0	3	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0019	3372	3	2	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0020	3366	3	0	0	3	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0021	3366	2	0	2	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0022	3372	2	0	1	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0023	3366	2	0	0	2	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0024	3372	2	0	0	0	0	2	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0025	3366	2	0	1	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0026	3372	2	2	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0027	3372	2	0	1	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0028	3372	2	1	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0029	3372	2	0	0	0	0	2	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0030	3366	2	0	0	2	0	0	copy fasta	USP36	chr17	78790652	78845814