JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP36_chr17_78790652_78845814	0/0	c0031	3372	2	0	0	2	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0032	3372	2	2	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0033	3372	2	2	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0034	3372	2	1	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0035	3372	2	2	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0036	3372	1	0	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0037	3372	1	0	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0038	3372	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0039	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0040	3366	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0041	3376	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0042	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0043	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0044	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0045	3366	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0046	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0047	3372	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0048	3366	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0049	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0050	3372	1	0	0	0	0	1	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0051	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0052	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0053	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0054	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0055	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0056	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0057	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0058	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0059	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0060	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0061	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0062	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0063	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0064	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0065	3366	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0066	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0067	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0068	3366	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0069	3366	1	0	1	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0070	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0071	3372	1	0	0	1	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0072	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0073	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0074	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0075	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP36_chr17_78790652_78845814	0/0	c0076	3372	1	1	0	0	0	0	copy fasta	USP36	chr17	78790652	78845814
USP37_chr2_218445251_218573351	0/1	c0001	2940	254	77	40	97	11	28	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	c0002	2940	8	0	0	8	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	c0003	2940	7	7	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	c0004	2940	2	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351