JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP37_chr2_218445251_218573351	0/0	c0005	2940	2	0	0	2	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	1/0	c0006	2940	2	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	c0007	2940	2	0	0	2	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	c0008	2940	2	2	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	c0009	2940	1	1	0	0	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	c0010	2940	1	0	0	1	0	0	copy fasta	USP37	chr2	218445251	218573351
USP37_chr2_218445251_218573351	0/0	c0011	2940	1	0	0	0	1	0	copy fasta	USP37	chr2	218445251	218573351
USP38_chr4_143179917_143228874	0/1	c0001	3129	140	57	30	33	3	16	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	1/0	c0002	3129	76	14	15	30	2	14	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0003	3129	26	18	3	1	3	1	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0004	3129	5	4	1	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0005	3129	3	0	0	3	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0006	3129	2	0	0	0	0	2	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0007	3129	1	0	0	0	0	1	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0008	3129	1	0	0	1	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0009	3129	1	0	0	1	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0010	3129	1	1	0	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0011	3129	1	0	1	0	0	0	copy fasta	USP38	chr4	143179917	143228874
USP38_chr4_143179917_143228874	0/0	c0012	3129	1	0	0	1	0	0	copy fasta	USP38	chr4	143179917	143228874
USP39_chr2_85611186_85654283	1/1	c0001	1698	239	56	56	83	8	34	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0002	1698	84	21	2	56	1	4	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0003	1698	11	6	4	1	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0004	1698	6	1	3	0	1	1	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0005	1698	2	0	0	2	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0006	1698	1	0	0	1	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0007	1698	1	0	1	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0008	1698	1	0	1	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0009	1698	1	1	0	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0010	1698	1	0	0	1	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0011	1698	1	0	0	0	0	1	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0012	1698	1	0	1	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP39_chr2_85611186_85654283	0/0	c0013	1698	1	1	0	0	0	0	copy fasta	USP39	chr2	85611186	85654283
USP3_chr15_63499593_63599633	1/1	c0001	1563	200	65	52	41	13	27	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	c0002	1563	17	11	6	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	c0003	1563	7	7	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	c0004	1563	4	0	2	0	1	1	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	c0005	1563	3	0	0	3	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	c0006	1563	2	2	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP3_chr15_63499593_63599633	0/0	c0007	1563	1	1	0	0	0	0	copy fasta	USP3	chr15	63499593	63599633
USP40_chr2_233470526_233571782	0/1	c0001	3711	142	19	29	73	9	11	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0002	3711	43	13	9	16	0	5	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0003	3711	36	0	10	22	3	1	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0004	3714	31	12	4	7	6	2	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0005	3711	10	0	0	10	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0006	3711	9	9	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0007	3711	7	7	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0008	3711	5	5	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0009	3711	5	5	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0010	3711	5	5	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0011	3711	3	3	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782