JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP40_chr2_233470526_233571782	0/0	c0012	3714	2	2	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0013	3714	2	2	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0014	3711	2	0	0	2	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0015	3711	2	2	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0016	3737	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0017	3711	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0018	3711	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0019	3711	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0020	3714	1	0	1	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0021	3714	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	1/0	c0022	3711	1	0	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0023	3711	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0024	3711	1	0	0	0	0	1	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0025	3711	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0026	3711	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0027	3711	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0028	3711	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0029	3711	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0030	3711	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0031	3711	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0032	3711	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0033	3711	1	1	0	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0034	3711	1	0	1	0	0	0	copy fasta	USP40	chr2	233470526	233571782
USP40_chr2_233470526_233571782	0/0	c0035	3711	1	0	0	1	0	0	copy fasta	USP40	chr2	233470526	233571782
USP42_chr7_6099949_6166564	1/0	c0001	3951	117	10	35	43	7	21	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0002	3951	77	17	8	44	0	8	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0003	3951	60	2	10	47	0	1	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0004	3951	14	14	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0005	3951	13	1	8	0	1	3	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0006	3951	12	4	1	5	0	2	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0007	3951	9	2	1	6	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0008	3951	9	0	0	9	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0009	3951	9	3	3	1	0	2	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0010	3951	7	6	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0011	3951	6	5	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0012	3951	3	2	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0013	3951	3	3	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0014	3951	3	3	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0015	3951	3	0	0	0	2	1	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0016	3951	2	0	0	2	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0017	3951	2	1	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0018	3951	2	0	0	2	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0019	3951	2	2	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0020	3951	2	0	0	2	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0021	3951	2	2	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0022	3951	2	0	0	1	0	1	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0023	3951	2	0	2	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0024	3951	2	2	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0025	3951	2	0	1	0	1	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0026	3951	2	2	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564