JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP42_chr7_6099949_6166564	0/0	c0027	3951	2	0	1	0	0	1	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0028	3951	2	0	0	2	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0029	3951	1	0	0	1	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0030	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0031	3951	1	0	0	0	0	1	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/1	c0032	3951	1	0	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0033	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0034	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0035	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0036	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0037	3951	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0038	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0039	3951	1	0	0	1	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0040	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0041	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0042	3951	1	0	0	1	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0043	3951	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0044	3951	1	0	0	0	0	1	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0045	3951	1	0	0	0	1	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0046	3951	1	0	0	0	1	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0047	3951	1	0	0	0	1	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0048	3951	1	0	0	1	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0049	3951	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0050	3951	1	1	0	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP42_chr7_6099949_6166564	0/0	c0051	3951	1	0	1	0	0	0	copy fasta	USP42	chr7	6099949	6166564
USP43_chr17_9640517_9734687	1/1	c0001	3372	85	10	20	32	5	16	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0002	3372	62	17	12	25	1	7	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0003	3372	46	10	0	29	1	6	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0004	3372	22	2	0	20	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0005	3372	14	5	1	8	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0006	3372	10	10	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0007	3372	10	0	0	10	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0008	3372	8	3	0	4	1	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0009	3372	6	0	0	6	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0010	3372	4	4	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0011	3372	4	3	1	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0012	3372	4	4	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0013	3372	4	4	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0014	3372	4	1	2	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0015	3372	3	2	1	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0016	3372	3	3	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0017	3372	3	0	0	3	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0018	3372	2	2	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0019	3372	2	2	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0020	3372	2	2	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0021	3372	2	0	2	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0022	3372	2	2	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0023	3372	2	2	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0024	3372	2	0	2	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0025	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687