JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP43_chr17_9640517_9734687	0/0	c0026	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0027	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0028	3372	1	0	0	0	0	1	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0029	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0030	3372	1	0	0	0	0	1	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0031	3372	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0032	3372	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0033	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0034	3372	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0035	3372	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0036	3372	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0037	3372	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0038	3372	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0039	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0040	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0041	3372	1	0	0	1	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0042	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0043	3372	1	0	1	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0044	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0045	3372	1	1	0	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0046	3372	1	0	1	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0047	3372	1	0	1	0	0	0	copy fasta	USP43	chr17	9640517	9734687
USP43_chr17_9640517_9734687	0/0	c0048	3372	1	0	0	0	0	1	copy fasta	USP43	chr17	9640517	9734687
USP44_chr12_95511560_95556476	0/1	c0001	2139	225	39	38	110	12	25	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	1/0	c0002	2139	113	13	26	57	4	12	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0003	2139	19	3	4	7	0	5	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0004	2139	14	13	1	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0005	2139	13	13	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0006	2139	5	0	0	5	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0007	2139	4	4	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0008	2139	2	1	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0009	2139	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0010	2139	1	0	1	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0011	2139	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0012	2139	1	0	0	1	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0013	2139	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0014	2139	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP44_chr12_95511560_95556476	0/0	c0015	2139	1	1	0	0	0	0	copy fasta	USP44	chr12	95511560	95556476
USP45_chr6_99427325_99520423	0/1	c0001	2445	132	32	12	69	4	14	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0002	2445	92	4	24	53	3	8	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0003	2445	76	11	21	27	3	14	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0004	2445	23	1	17	0	2	3	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0005	2445	13	1	3	5	2	2	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0006	2445	8	3	0	5	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0007	2445	8	1	2	5	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0008	2445	6	5	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	1/0	c0009	2445	6	4	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0010	2445	6	6	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0011	2445	5	5	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0012	2445	5	2	2	0	1	0	copy fasta	USP45	chr6	99427325	99520423