JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP45_chr6_99427325_99520423	0/0	c0013	2445	4	3	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0014	2445	4	0	1	2	1	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0015	2445	3	0	0	3	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0016	2445	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0017	2445	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0018	2445	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0019	2445	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0020	2445	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0021	2445	1	0	1	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0022	2445	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0023	2445	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0024	2445	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0025	2445	1	1	0	0	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0026	2445	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0027	2445	1	0	0	0	0	1	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0028	2445	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0029	2445	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP45_chr6_99427325_99520423	0/0	c0030	2445	1	0	0	1	0	0	copy fasta	USP45	chr6	99427325	99520423
USP46_chr4_52585960_52664301	1/1	c0001	1101	158	56	26	57	13	4	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	c0002	1101	14	14	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	c0003	1101	9	1	0	8	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	c0004	1101	7	7	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	c0005	1101	2	1	0	0	1	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	c0006	1101	1	1	0	0	0	0	copy fasta	USP46	chr4	52585960	52664301
USP46_chr4_52585960_52664301	0/0	c0007	1101	1	0	0	1	0	0	copy fasta	USP46	chr4	52585960	52664301
USP47_chr11_11836972_11966887	0/0	c0001	4068	149	70	23	37	5	14	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0002	4068	93	7	14	56	3	13	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/1	c0003	4068	56	1	17	20	4	13	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0004	4068	50	1	8	37	2	2	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0005	4068	13	12	1	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0006	4068	6	0	4	0	1	1	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0007	4068	5	0	0	5	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0008	4068	3	0	0	3	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0009	4068	2	0	1	0	1	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0010	4068	2	0	0	2	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0011	4068	1	0	0	0	0	1	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0012	4068	1	0	0	1	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0013	4068	1	0	0	1	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	1/0	c0014	4068	1	0	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0015	4068	1	0	0	0	0	1	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0016	4068	1	0	0	0	0	1	copy fasta	USP47	chr11	11836972	11966887
USP47_chr11_11836972_11966887	0/0	c0017	4068	1	1	0	0	0	0	copy fasta	USP47	chr11	11836972	11966887
USP48_chr1_21673298_21788149	1/1	c0001	3108	245	87	39	72	12	33	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	c0002	3108	112	1	27	71	2	11	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	c0003	3108	2	0	2	0	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	c0004	3108	1	0	0	1	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	c0005	3108	1	1	0	0	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	c0006	3108	1	1	0	0	0	0	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	c0007	3108	1	0	0	0	0	1	copy fasta	USP48	chr1	21673298	21788149
USP48_chr1_21673298_21788149	0/0	c0008	3108	1	0	0	0	0	1	copy fasta	USP48	chr1	21673298	21788149