JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BMPR2_chr2_202371327_202572749	0/0	c0004	3117	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	c0005	3117	1	0	0	1	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	c0006	3117	1	0	0	0	0	1	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	c0007	3117	1	1	0	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMPR2_chr2_202371327_202572749	0/0	c0008	3117	1	0	1	0	0	0	copy fasta	BMPR2	chr2	202371327	202572749
BMS1_chr10_42777795_42839937	0/1	c0001	3849	81	17	21	35	1	6	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0002	3849	67	2	8	39	4	14	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	1/0	c0003	3849	58	12	14	15	7	9	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0004	3849	48	23	15	3	0	7	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0005	3849	34	16	5	11	0	2	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0006	3849	28	0	0	28	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0007	3849	19	0	1	18	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0008	3849	11	3	4	0	3	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0009	3849	3	0	0	3	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0010	3849	3	0	0	3	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0011	3849	2	0	0	2	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0012	3849	2	2	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0013	3849	2	0	2	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0014	3849	2	1	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0015	3849	2	2	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0016	3849	2	1	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0017	3849	2	2	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0018	3849	2	0	0	2	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0019	3849	1	0	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0020	3849	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0021	3849	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0022	3849	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0023	3849	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0024	3849	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0025	3849	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0026	3849	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0027	3849	1	0	0	0	1	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0028	3849	1	0	1	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0029	3849	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0030	3849	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0031	3849	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0032	3849	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0033	3849	1	0	0	0	0	1	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0034	3849	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0035	3849	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0036	3849	1	0	0	1	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0037	3849	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMS1_chr10_42777795_42839937	0/0	c0038	3849	1	1	0	0	0	0	copy fasta	BMS1	chr10	42777795	42839937
BMT2_chr7_112814147_112944875	1/1	c0001	1218	200	85	45	34	8	26	copy fasta	BMT2	chr7	112814147	112944875
BMT2_chr7_112814147_112944875	0/0	c0002	1218	6	5	1	0	0	0	copy fasta	BMT2	chr7	112814147	112944875
BMX_chrX_15495807_15561519	1/1	c0001	2028	212	62	48	68	9	23	copy fasta	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	c0002	2028	1	0	0	1	0	0	copy fasta	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	c0003	2028	1	0	0	0	0	1	copy fasta	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	c0004	2028	1	1	0	0	0	0	copy fasta	BMX	chrX	15495807	15561519
BMX_chrX_15495807_15561519	0/0	c0005	2028	1	1	0	0	0	0	copy fasta	BMX	chrX	15495807	15561519