JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
USP6NL_chr10_11455510_11616650	0/1	c0001	2487	193	43	19	110	6	14	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	1/0	c0002	2487	142	26	52	40	8	15	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0003	2487	34	2	5	21	0	6	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0004	2487	12	0	0	9	0	3	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0005	2487	5	5	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0006	2487	3	0	1	0	2	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0007	2487	2	1	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0008	2487	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0009	2487	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0010	2487	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0011	2487	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0012	2487	1	0	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0013	2487	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0014	2487	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0015	2487	1	0	0	1	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0016	2487	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0017	2487	1	0	1	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6NL_chr10_11455510_11616650	0/0	c0018	2487	1	1	0	0	0	0	copy fasta	USP6NL	chr10	11455510	11616650
USP6_chr17_5111032_5179991	0/0	c0001	4221	133	35	19	64	2	13	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0002	4221	64	13	28	8	4	11	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0003	4221	49	12	3	31	1	2	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0004	4221	29	2	4	21	0	2	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/1	c0005	4221	26	1	8	9	3	4	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0006	4221	5	0	0	5	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0007	4221	4	0	2	0	2	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0008	4221	4	0	0	4	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0009	4221	4	0	0	4	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0010	4221	4	4	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0011	4221	4	3	1	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0012	4221	3	0	0	3	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0013	4221	3	3	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0014	4221	3	3	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0015	4221	2	1	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0016	4221	2	2	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0017	4221	2	0	2	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0018	4221	2	2	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0019	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0020	4221	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0021	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0022	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0023	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0024	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0025	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0026	4221	1	0	0	0	0	1	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0027	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0028	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0029	4221	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0030	4221	1	0	0	1	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0031	4221	1	1	0	0	0	0	copy fasta	USP6	chr17	5111032	5179991
USP6_chr17_5111032_5179991	0/0	c0032	4221	1	0	0	0	0	1	copy fasta	USP6	chr17	5111032	5179991